1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CAACCTGAGACATGTCTGGTAAACAAAGGAACATCCGGAAACGAGTAGCATCTGAGGATGAAGATGCCCCGGACGTCAGCGCTGAGCCCGAATGCCAACGgtaagccaagtcttgaccagcagcgacttccttctcggggcccgcagcaggagcagcggcttttcctgggaaatctgcgaagcctctctcctgaccacctaggggttgtccccgcttctcaaaccctccaaaccctaacgcacccccgcag
species | Chlamydomonas reinhardtii |
transcript | EDP06364 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCTGAGGATGAAGATGCCCCGGACGTCAGCGCTGAGCCCGAATGCCAACG CGATAAACTGGCTGAGACGCGGCTAATGCAGCAGCTGCGCAAGCGCAGCGCEST: gi|34991151|gb|CF565068.1|CF565068
genomic: TCTGAGGATGAAGATGCCCCGGACGTCAGCGCTGAGCCCGAATGCCAACGgtaagccaag ... acccccgcagCGATAAACTGGCTGAGACGCGGCTAATGCAGCAGCTGCGCAAGCGCAGCGC
EST: TCTGAGGATGAAGATGCCCCGGACGTCAGCGCTGAGCCCGAATGCCAACG CGATAAACTGGCTGAGACGCGGCTAATGCAGCAGCTGCGCAAGCGCAGCGCEST: gi|34991150|gb|CF565067.1|CF565067
genomic: TCTGAGGATGAAGATGCCCCGGACGTCAGCGCTGAGCCCGAATGCCAACGgtaagccaag ... acccccgcagCGATAAACTGGCTGAGACGCGGCTAATGCAGCAGCTGCGCAAGCGCAGCGC
EST: TCTGAGGATGAAGATGCCCCGGACGTCAGCGCTGAGCCCGAATGCCAACG CGATAAACTGGCTGAGACGCGGCTAATGCAGCAGCTGCGCAAGCGCAGCGCEST: gi|34980664|gb|CF554693.1|CF554693
genomic: TCTGAGGATGAAGATGCCCCGGACGTCAGCGCTGAGCCCGAATGCCAACGgtaagccaag ... acccccgcagCGATAAACTGGCTGAGACGCGGCTAATGCAGCAGCTGCGCAAGCGCAGCGC
EST: TCTGAGGATGAAGATGCCCCGGACGTCAGCGCTGAGCCCGAATCCCAACG CGATAAACTGGCTGAGACGCGGCTAATGCAGCAGCTGCGCAAGCGCAGCGCEST: gi|34980665|gb|CF554694.1|CF554694
genomic: TCTGAGGATGAAGATGCCCCGGACGTCAGCGCTGAGCCCGAATGCCAACGgtaagccaag ... acccccgcagCGATAAACTGGCTGAGACGCGGCTAATGCAGCAGCTGCGCAAGCGCAGCGC
EST: TCTGAGGATGAAGATGCCCCGGACGTCAGCGCTGAGCCCGAATGCCAACG CGATAAACTGGCTGAGACGCGGCTAATGCAGCAGCTGCGCAAGCGCAGCGCEST: gi|34993931|gb|CF567848.1|CF567848
genomic: TCTGAGGATGAAGATGCCCCGGACGTCAGCGCTGAGCCCGAATGCCAACGgtaagccaag ... acccccgcagCGATAAACTGGCTGAGACGCGGCTAATGCAGCAGCTGCGCAAGCGCAGCGC
EST: TCTGAGGATGAAGATGCCCCGGACGTCAGCGCTGAGCCCGAATGCCAACG CGATAAACTGGCTGAGACGCGGCTAATGCAGCAGCTGCGCAAGCGCAGCGCEST: gi|15701860|gb|BI726165.1|BI726165
genomic: TCTGAGGATGAAGATGCCCCGGACGTCAGCGCTGAGCCCGAATGCCAACGgtaagccaag ... acccccgcagCGATAAACTGGCTGAGACGCGGCTAATGCAGCAGCTGCGCAAGCGCAGCGC
EST: TCTGAGGATGAAGATGCCCCGGACGTCAGCGCTGAGCCCGAATGCCAACG CGATAAACTGGCTGAGACGCGGCTAATGCAGCAGCTGCGCAAGCGCAGCGCEST: gi|34988141|gb|CF562058.1|CF562058
genomic: TCTGAGGATGAAGATGCCCCGGACGTCAGCGCTGAGCCCGAATGCCAACGgtaagccaag ... acccccgcagCGATAAACTGGCTGAGACGCGGCTAATGCAGCAGCTGCGCAAGCGCAGCGC
EST: TCTGAGGATGAAGATGCCCCGGACGTCAGCGCTGAGCCCGAATGCCAACG CGATAAACTGGCTGAGACGCGGCTAATGCAGCAGCTGCGCAAGCGCAGCGCEST: gi|34988140|gb|CF562057.1|CF562057
genomic: TCTGAGGATGAAGATGCCCCGGACGTCAGCGCTGAGCCCGAATGCCAACGgtaagccaag ... acccccgcagCGATAAACTGGCTGAGACGCGGCTAATGCAGCAGCTGCGCAAGCGCAGCGC
EST: TCTGAGGATGAAGATGCCCCGGACGTCAGCGCTGAGCCCGAATGCCAACG CGATAAACTGGCTGAGACGCGGCTAATGCAGCAGCTGCGCAAGCGCAGCGCEST: gi|10778816|gb|AV635496.1|AV635496
genomic: TCTGAGGATGAAGATGCCCCGGACGTCAGCGCTGAGCCCGAATGCCAACGgtaagccaag ... acccccgcagCGATAAACTGGCTGAGACGCGGCTAATGCAGCAGCTGCGCAAGCGCAGCGC
EST: TCTGAGGATGAAGATGCCCCGGACGTCAGCGCTGAGCCCGAATGCCAACG CGATAAACTGGCTGAGACGCGGCTAATGCAGCAGCTGCGCAAGCGCAGC
genomic: TCTGAGGATGAAGATGCCCCGGACGTCAGCGCTGAGCCCGAATGCCAACGgtaagccaag ... acccccgcagCGATAAACTGGCTGAGACGCGGCTAATGCAGCAGCTGCGCAAGCGCAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAACCTGAGACATGTCTGGTAAACAAAGGAACATCCGGAAACGAGTAGCATCTGAGGATGAAGATGCCCCGGACGTCAGCGCTGAGCCCGAATGCCAACGgtaagccaagtcttgaccagcagcgacttccttctcggggcccgcagcaggagcagcggcttttcctgggaaatctgcgaagcctctctcctgaccacctaggggttgtccccgcttctcaaaccctccaaaccctaacgcacccccgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG