1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TCCTTCATCTTAACCTTTCTAGCTGAATGGGGTGACCGTAGCCAGATCGCTACAATAGCTgtaagagtcatctctcatatctagcttcttactaaaattgaccagtgactgacttttatctttttttgaag
species | Arabidopsis thaliana |
transcript | AT5G36290.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TAACCTTTCTAGCTGAATGGGGTGACCGTAGCCAGATCGCTACAATAGCT TTGGCGACTCACAAGAACGCCATAGGAGTGGCCATTEST: gi|125090963|gb|EL148786.1|EL148786
genomic: TAACCTTTCTAGCTGAATGGGGTGACCGTAGCCAGATCGCTACAATAGCTgtaagagtca ... ttttttgaagTTGGCGACTCACAAGAACGCCATAGGAGTGGCCATT
EST: TAACCTTTCTAGCTGAATGGGGTGACCGTAGCCAGATCGCTACAATAGCT TTGGCGACTCAEST: gi|125298284|gb|EL312369.1|EL312369
genomic: TAACCTTTCTAGCTGAATGGGGTGACCGTAGCCAGATCGCTACAATAGCTgtaagagtca ... ttttttgaagTTGGCGACTCA
EST: TAACCTTTCTAGCTGAATGGGGTGACCGTAGCCAGATCGCTACAATAGCT TTGGCGACTCACAAGAACGCCATAGGAGTGGCCATTEST: gi|124770163|gb|EH860293.1|EH860293
genomic: TAACCTTTCTAGCTGAATGGGGTGACCGTAGCCAGATCGCTACAATAGCTgtaagagtca ... ttttttgaagTTGGCGACTCACAAGAACGCCATAGGAGTGGCCATT
EST: TTCTAGCTGAATGGGGTGACCGTAGCCAGATCGCTACAATAGCT TTGGCGACTCACAAGAACGCCATAGGAGTGGCCATTGGGGCAAGTATTGGA
genomic: TTCTAGCTGAATGGGGTGACCGTAGCCAGATCGCTACAATAGCTgtaagagtca ... ttttttgaagTTGGCGACTCACAAGAACGCCATAGGAGTGGCCATTGGGGCAAGTATTGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCTTCATCTTAACCTTTCTAGCTGAATGGGGTGACCGTAGCCAGATCGCTACAATAGCTgtaagagtcatctctcatatctagcttcttactaaaattgaccagtgactgacttttatctttttttgaag
- - - - - - - - - - AGCTGA