1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
AAATCCGTGGAGCACTCGGATCTGTGAACCAGTTGTTCATCTGTATAGGAATACTTGCAGCCTTGATAGCTGGATTACCCCTTGCAGCAAACCCTCTATGgtatgtaacatcccttttttattcatcatcttttattttgggttgcatactgtgataagttttgatatcgtggtcttctag
species | Arabidopsis thaliana |
transcript | AT5G16150.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CCCCTTGCAGCAAACCCTCTATG GTGGAGGACGATGTTTGGTGTTGCAGTTATCCCTTCCGTTCTATTGGCCATEST: gi|116470693|gb|EG513285.1|EG513285
genomic: CCCCTTGCAGCAAACCCTCTATGgtatgtaaca ... ggtcttctagGTGGAGGACGATGTTTGGTGTTGCAGTTATCCCTTCCGTTCTATTGGCCAT
EST: ATACTTGCAGCCTTGATAGCTGGATTACCCCTTGCAGCAAACCCTCTATG GTGGAGGACGATGTTTGGTGTTGCAGTTATCCCTTCCGTTCTATTGGCCATEST: gi|124952084|gb|EL027384.1|EL027384
genomic: ATACTTGCAGCCTTGATAGCTGGATTACCCCTTGCAGCAAACCCTCTATGgtatgtaaca ... ggtcttctagGTGGAGGACGATGTTTGGTGTTGCAGTTATCCCTTCCGTTCTATTGGCCAT
EST: ATTACCCCTTGCAGCAAACCCTCTACG GTGGAGGACGATGTTTGGTGTTGCAGTTATCCCTTCCGTTCTATTGGCCATEST: gi|164042456|gb|ES081840.1|ES081840
genomic: ATTACCCCTTGCAGCAAACCCTCTATGgtatgtaaca ... ggtcttctagGTGGAGGACGATGTTTGGTGTTGCAGTTATCCCTTCCGTTCTATTGGCCAT
EST: CCTTGATAGCTGGATTACCCCTTGCAGCAAACCCTCTATG GTGGAGGACGATGTTTGGTGTTGCAGTTATCCCTTCCGTTCTATTGGCCAT
genomic: CCTTGATAGCTGGATTACCCCTTGCAGCAAACCCTCTATGgtatgtaaca ... ggtcttctagGTGGAGGACGATGTTTGGTGTTGCAGTTATCCCTTCCGTTCTATTGGCCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAATCCGTGGAGCACTCGGATCTGTGAACCAGTTGTTCATCTGTATAGGAATACTTGCAGCCTTGATAGCTGGATTACCCCTTGCAGCAAACCCTCTATGgtatgtaacatcccttttttattcatcatcttttattttgggttgcatactgtgataagttttgatatcgtggtcttctag
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