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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGACCCAGGAGAAGTCCTACATGGTCTCTTTGTTCCTCAACTTAAAGGAAATGGTGCAACTGGTCTCGCAATCTCTTTGCTCGGAGCCATGGTTATGCCgtaagctcactctctctcttcaccaccattcatcataagattctttgctgagaacaacatctgttctctgcag

Basic information

species Arabidopsis thaliana
transcript AT1G80830.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G80830.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G069198_T04 (Zea mays), 5'ss of exon 8
CAGACCCAGGAGAAGTCCTACATGGTCTCTTTGTTCCTCAACTTAAAGGAAATGGTGCAACTGGTCTCGCAATCTCTTTGCTCGGAGCCATGGTTATGCCgtaagctcactctctctcttcaccaccattcatcataagattctttgc-tgagaacaacatctgttc-tctgcag------------
|| |  |   ||||||  |    || || ||||||||| |||||||||||||||| || || || || || ||||| || || || || ||||| ||||||||||||   | |      |  |        | |||  | ||     | | ||| |    ||  ||  ||||               
CAAATGCTCCAGAAGTTGTTAGGGGCCTTTTTGTTCCTGAACTTAAAGGAAATGGAGCTACAGGCCTTGCTATCTCATTACTTGGTGCTATGGTGATGCCgtaagcttctttttctatctttctgttcccaagcatttggtttagaacataagacctttttccatttatctgttacataaattgcag

upper sequence: AT1G80830.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv09s0070g00210.t01 (Vitis vinifera), 5'ss of exon 8
CAGACCCAGGAGAAGTCCTACATGGTCTCTTTGTTCCTCAACTTAAAGGAAATGGTGCAACTGGTCTCGCAATCTCTTTGCTCGGAGCCATGGTTATGCCgtaagctcactctctctcttcaccaccattcatcataagattctttgctgagaacaacat-ctgttctctgcag---------------------
|  |  |   ||||||| | | ||| ||||||||||| ||||| |||||||||||||| |||||||| ||||| ||  | || || || |||||||||||||||| |   | | || | | |  |    | ||  |   || | ||  | | || || || || |||| ||  |                     
CCAATTCTTCAGAAGTCTTGCGTGGACTCTTTGTTCCACAACTCAAAGGAAATGGTGCTACTGGTCTTGCAATTTCCCTCCTTGGTGCTATGGTTATGCCgtaagtttcttatgtc-catgagaagtgcttatttttccatgcatttttcaaaaaaatattctcttctttgttgactctcatgcacttgctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116476119|gb|EG518711.1|EG518711
EST:     AATGGTGCAACTGGTCTCGCAATCTCTTTGCTCGGAGCCATGGTTATGCC                         GCATAATCTCTTCCTCCACTCGGCCTTGGTTCTCTCGAGGAAAATCCCTCG
genomic: AATGGTGCAACTGGTCTCGCAATCTCTTTGCTCGGAGCCATGGTTATGCCgtaagctcac ... ttctctgcagGCATAATCTCTTCCTCCACTCGGCCTTGGTTCTCTCGAGGAAAATCCCTCG
EST: gi|116476122|gb|EG518714.1|EG518714
EST:     AATGGTGCAACTGGTCTCGCAATCTCTTTGCTCGGAGCCATGGTTATGCC                         GCATAATCTCTTCCTCCACTCGGTCTTGGTTCTCTCGAGGAAAATCCCTCG
genomic: AATGGTGCAACTGGTCTCGCAATCTCTTTGCTCGGAGCCATGGTTATGCCgtaagctcac ... ttctctgcagGCATAATCTCTTCCTCCACTCGGCCTTGGTTCTCTCGAGGAAAATCCCTCG
EST: gi|116476121|gb|EG518713.1|EG518713
EST:     AATGGTGCAACTGGTCTCGCAATCTCTTTGCTCGGAGCCATGGTTATGCC                         GCATAATCTCTTCCTCCACTCGGTCTTGGTTCTCTCGAGGAAAATCCCTCG
genomic: AATGGTGCAACTGGTCTCGCAATCTCTTTGCTCGGAGCCATGGTTATGCCgtaagctcac ... ttctctgcagGCATAATCTCTTCCTCCACTCGGCCTTGGTTCTCTCGAGGAAAATCCCTCG
EST: gi|116476120|gb|EG518712.1|EG518712
EST:     AATGGTGCAACTGGTCTCGCAATCTCTTTGCTCGGAGCCATGGTTATGCC                         GCATAATCTCTTCCTCCACTCGGCCTTGGTTCTCTCGAGGAAAATCCCTCG
genomic: AATGGTGCAACTGGTCTCGCAATCTCTTTGCTCGGAGCCATGGTTATGCCgtaagctcac ... ttctctgcagGCATAATCTCTTCCTCCACTCGGCCTTGGTTCTCTCGAGGAAAATCCCTCG