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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCAAGGTCCTTGGAGTTTATGATTCCCCAATCATGCCAATAATGCTTTACAATCCAGCAAAAATCGCAGCCTTCTCAAGGGAATGTTTGCGAGAAAACgtaagtctcttatttgttttccaatatctcacttgcttccgcgcaaaagagattcacctctatgtttcaatgaacattttaaactttgaacag

Basic information

species Arabidopsis thaliana
transcript AT3G48790.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G48790.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA16G26210.1 (Glycine max), 5'ss of exon 10
GTTCAAGGTCCTTGGAGTTTATGATTCCCCAATCATGCCAATAATGCTTTACAATCCAGCAAAAATCGCAGCCTTCTCAAGGGAATGTTTGCGAGAAAACgtaag-tctcttatttgttttccaatatctcacttgcttccgcgcaaaagagattcacctctatgtttcaatgaacattt-taaactttgaa--cag
 ||  |||| ||||| | | ||||||| ||| | |||||||| ||||||||||| || || |||||| | ||||||||||| || ||  |     | || ||||| ||    ||     ||       ||   | | | ||   ||  |   ||     |  |  | | ||| ||  |||   |  ||||||  |||
ATTTGAGGTTCTTGGGGATAATGATTCTCCAGTAATGCCAATCATGCTTTACAACCCCGCCAAAATCCCTGCCTTCTCAAGAGAGTGCCTCAAGCAGAATgtaagatcaaacatccaactttatgctccttg-tcgataccctacatcatgtataagaatgaaattgttaatcaatgtttaccatttttgaattcag

upper sequence: AT3G48790.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv17s0000g00500.t01 (Vitis vinifera), 5'ss of exon 11
GTTCAAGGTCCTTGGAGTTTATGATTCCCCAATCATGCCAATAATGCTTTACAATCCAGCAAAAATCGCAGCCTTCTCAAGGGAATGTTTGCGAGAAAACgtaagtctcttatttgttttcca---atatctcacttgcttccgcgcaaaagagattcacct--ctatgtttcaatgaa--cattttaaac-tttgaacag-------------------------------------------------------------------
 ||  |||| ||||||| | ||||||| ||  | |||||||||||||||||||||||||| |||||  | ||||| ||  |||| ||| |   | | || |||||  |  | |||  |||| |   ||    || |    ||    ||     |||| |  |  ||    | ||  ||   ||  | |  | |||| | ||                                                                   
CTTTGAGGTTCTTGGAGATAATGATTCTCCTGTAATGCCAATAATGCTTTACAATCCAGCCAAAATTCCTGCCTTTTCGCGGGAGTGTCTCAAACAGAATgtaagctttatctttaatttctatacattcaccattcatgtcttttcattcttgattaaagtagctgcaatacagagattccaagtcattcatttgtatagcactgctcattaatctccagttcaagttcacttgtgtggctagtattgacaagttatgctgttccag