Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGAAGATTATGGAAATTGATGACCATATAGGTTGTGCTATGAGTGGTCTGATTGCTGACGCGCGAACACTTGTTGAGCATGCACGAGTAGAGACCCAGgtgagatctcagtttctgactttctgtttctcatggatttgtttttacatcaaaagttctttctgttaccaactggttttattatgttgagcag

Basic information

species Arabidopsis thaliana
transcript AT3G14290.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164180029|gb|ES062201.1|ES062201
EST:     ACACTTGTTGAGCATGCACGAGTAGAGACCCAG                         AACCACAGGTTCTCGTATGGTGAGCCAATGACTGTAGAATCTACAACACAA
genomic: ACACTTGTTGAGCATGCACGAGTAGAGACCCAGgtgagatctc ... tgttgagcagAACCACAGGTTCTCGTATGGTGAGCCAATGACTGTAGAATCTACAACACAA
EST: gi|116474984|gb|EG517576.1|EG517576
EST:     TGATTGCTGACGCGCGAACACTTGTTGAGCATGCACGAGTAGAGACCCAG                         AACCACAGGTTCTCGTATGGTGAGCCAATGACTGT
genomic: TGATTGCTGACGCGCGAACACTTGTTGAGCATGCACGAGTAGAGACCCAGgtgagatctc ... tgttgagcagAACCACAGGTTCTCGTATGGTGAGCCAATGACTGT
EST: gi|163971098|gb|ES011042.1|ES011042
EST:     TGATTGCTGACGCGCGAACACTTGTTGAGCATGCACGAGTAGAGACC-AG                         AACCACAGGTTCTCGTATGGT
genomic: TGATTGCTGACGCGCGAACACTTGTTGAGCATGCACGAGTAGAGACCCAGgtgagatctc ... tgttgagcagAACCACAGGTTCTCGTATGGT
EST: gi|86075577|gb|DR371334.1|DR371334
EST:     TGATTS-TGACGCGCGAACACTTGTTGAGCATGCACGAGTAGAGACCCAG                         AACCACAGGTTCTCGTATGGTGAGCCAATGACTGTAGAATCTACAACACAA
genomic: TGATTGCTGACGCGCGAACACTTGTTGAGCATGCACGAGTAGAGACCCAGgtgagatctc ... tgttgagcagAACCACAGGTTCTCGTATGGTGAGCCAATGACTGTAGAATCTACAACACAA