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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGGTTAATGGTGCTCTTGAATATCTTGCTAAGGATCTTGGGATCGCCGAAAATACTGTTTTGCAAGgcaagtatatgatgatccacttctttactcctcctgtcaacggtaaaatgattcgtgttttgattagtagccaaactcataattggtattctctatgattggtgttgagcag

Basic information

species Arabidopsis thaliana
transcript AT5G16150.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G16150.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G098011_T02 (Zea mays), 5'ss of exon 4
GGTGGTTAATGGTGCTCTTGAATATCTTGCTAAGGATCTTGGGATCGCCGAAAATACTGTTTTGCAAGgcaag-tatatg-----atgatccacttctttac------tcctcctgtcaacggtaaaatgattcgtgttttgattagtagccaaactcataattggtattctctatgattggtgttgagcag
 ||||| |||||||| |||||||||||||| ||||||||||| || || |||||| | || || || || | |  ||||      ||| || ||||  | |       ||| | |||         ||    |     || ||||    |   |   ||    |                            
TGTGGTCAATGGTGCGCTTGAATATCTTGCGAAGGATCTTGGAATTGCTGAAAATGCCGTCTTACAGggtatgacatatttttacatgctcaacttactcataccttttccccgtgtttgtaaaggaacatctaacacttcgattgactgtgcagtgcaatgctttc-------------------------

upper sequence: AT5G16150.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G098011_T01 (Zea mays), 5'ss of exon 4
GGTGGTTAATGGTGCTCTTGAATATCTTGCTAAGGATCTTGGGATCGCCGAAAATACTGTTTTGCAAGgcaag-tatat-----gatgatccacttctttactcctcctgtcaacggtaaaatgattcgtgttttgattagtagccaaactcataattggtattctctatgattggtgttgagcag
 ||||| |||||||| |||||||||||||| ||||||||||| || || |||||| | || || || || | |  ||||      ||| || ||||  | |  |||  |  |   | |    | |       | | |    | |    |||    | ||  || || | |                
TGTGGTCAATGGTGCGCTTGAATATCTTGCGAAGGATCTTGGAATTGCTGAAAATGCCGTCTTACAGGgtatgacatatttttacatgctcaacttactcataccttttccccgtgtttg--taaaggaacatctaacacttcgattgactgtgcagtgcaatgctttct----------------

upper sequence: AT5G16150.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G153704_T01 (Zea mays), 5'ss of exon 8
GGTGGTTAATGGTGCTCTTGAATATCTTGCTAAGGATCTTGGGATCGCCGAAAATACTGTTTTGCAAGgca-agtatat-----gatgatccacttctttactcctcctgtcaacggtaaaatgattcgtg---ttttgattagtagccaaactcataattggtattctctatgattggtgttgagcag
 ||||| ||||| || ||||||||||| || |||||||||||||| || |||||| |||| ||||| || |  | |||       ||| || ||||  |   |  || ||      |||||   |    ||   ||| ||||  | |     | | |||| | | || | |                  
TGTGGTCAATGGCGCACTTGAATATCTCGCGAAGGATCTTGGGATTGCTGAAAATGCTGTCTTGCAGGgtatggcatacttttacatgctcaacttaatactttttcttggtgtttgtaaaggaacatctgacatttggattgattgt--gccacgtaat-gttttttttt------------------

upper sequence: AT5G16150.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G153704_T03 (Zea mays), 5'ss of exon 4
GGTGGTTAATGGTGCTCTTGAATATCTTGCTAAGGATCTTGGGATCGCCGAAAATACTGTTTTGCAAGgca-agtatatg-----atgatccacttctttactcctcctgtcaacggtaa---aatgattcgtgttttgattagtagccaaactcataattggtattctctatgattggtgttgagcag
 ||||| ||||| || ||||||||||| || |||||||||||||| || |||||| |||| ||||| || |  | |||       ||| || ||||  |   |  || ||      ||||   ||    |    ||| ||||  | |     | | |||| | | || | | ||               
TGTGGTCAATGGCGCACTTGAATATCTCGCGAAGGATCTTGGGATTGCTGAAAATGCTGTCTTGCAGGGTATGgcatacttttacatgctcaacttaatactttttcttggtgtttgtaaaggaacatctgacatttggattgattgt--gccacgtaat-gtttttttttttgcc-------------

upper sequence: AT5G16150.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA13G07780.1 (Glycine max), 5'ss of exon 4
GGTGGTTAATGGTGCTCTTGAATATCTTGCTAAGGATCTTGGGATCGCCGAAAATACTGTTTTGCAAGgcaagtatatgatgatccacttctttactcctcctgtcaacggtaaaatgattcgtgttttgattagtagccaaactcataattggtattctctatgattggtgttgagcag
|||||| |||||||| |||||||| ||||||||||||||||| ||| | |||||||||||| | ||||| |  |   | || ||     | | |   |    ||| ||   | |||  | |  || |||  ||  ||| |||  | | || ||    | |     | ||  |||      
GGTGGTAAATGGTGCCCTTGAATACCTTGCTAAGGATCTTGGAATCACTGAAAATACTGTTATACAAGgtacatgctttat-atgtgtgtgtgt---ctatttgtaaattattaaacaaat--tgatttattttataggcaa--tgaaaactgtagatataagaaaatgcagtttc----

upper sequence: AT5G16150.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv14s0006g02720.t01 (Vitis vinifera), 5'ss of exon 4
GGTGGTTAATGGTGCTCTTGAATATCTTGCTAAGGATCTTGGGATCGCCGAAAATACTGTTTTGCAAGgcaagtatatgatgatccacttctttactcctcctgtcaacggtaaaatgattcgtgttttgattagtagccaaactcataattggtattctc-tatgattggtgttgagcag
|||||| ||||||||||||||||| ||| | ||||||||||| || || |||||| ||||||| ||||||||||  |   | ||   |||||| | |     ||  ||  | |   ||   | |  |    ||  |        |  |  |  || || |   ||||   ||         
GGTGGTGAATGGTGCTCTTGAATACCTTTCCAAGGATCTTGGAATTGCTGAAAATGCTGTTTTACAAGgcaagtgaa--gtaat---cttcttgattgactatgcaaagagaatcttggacctttatccttttttttttttttttttttttgtgtgttttgacatgacaagta--------