1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TTACTTTGGATCATATTGGTGGCCTCATGTGCGGCTTTGGTGATTCAATCTCTGGCTGCTAATCTTGGTGTTGTCACAGgttaccacaaaaatccactcttttcttttagttttatgatccaagtttactaaattccgctacag
species | Arabidopsis thaliana |
transcript | AT1G80830.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTAATCTTGGTGTTGTTACAG GAAAACATTTGGCTGAGCAATGTAGAGCCGAGTACTCCAAAGTTCCAAACTEST: gi|116476119|gb|EG518711.1|EG518711
genomic: CTAATCTTGGTGTTGTCACAGgttaccacaa ... tccgctacagGAAAACATTTGGCTGAGCAATGTAGAGCCGAGTACTCCAAAGTTCCAAACT
EST: TGCGGCTTTGGTGATTCAATCTCTGGCTGCTAATCTTGGTGTTGTCACAG GAAAACATTTGGCTGAGCAATGTAGAGCCGAGTACTCCAAAGTTCCAAACTEST: gi|116476121|gb|EG518713.1|EG518713
genomic: TGCGGCTTTGGTGATTCAATCTCTGGCTGCTAATCTTGGTGTTGTCACAGgttaccacaa ... tccgctacagGAAAACATTTGGCTGAGCAATGTAGAGCCGAGTACTCCAAAGTTCCAAACT
EST: TGCGGCTTTGGTGATTCAATCTCTGGCTGCTAATCTTGGTGTTGTCACAG GAAAACATTTGGCTGAGCAATGTAGAGCCGAGTACTCCAAAGTTCCAAACTEST: gi|124706877|gb|EH798279.1|EH798279
genomic: TGCGGCTTTGGTGATTCAATCTCTGGCTGCTAATCTTGGTGTTGTCACAGgttaccacaa ... tccgctacagGAAAACATTTGGCTGAGCAATGTAGAGCCGAGTACTCCAAAGTTCCAAACT
EST: TGCGGCTTTGGTGATTCAATCTCTGGCTGCTAATCTTGGTGTTGTCACAG GAAAACATTTG
genomic: TGCGGCTTTGGTGATTCAATCTCTGGCTGCTAATCTTGGTGTTGTCACAGgttaccacaa ... tccgctacagGAAAACATTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTACTTTGGATCATATTGGTGGCCTCATGTGCGGCTTTGGTGATTCAATCTCTGGCTGCTAATCTTGGTGTTGTCACAGgttaccacaaaaatccactcttttcttttagttttatgatccaagtttactaaattccgctacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT