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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTATTGATAATGACCGCGGAGTTCATATGAGGCCCATGCCTGGAATGCTTGGTTTAGTTTCCTCCAATTCCAAGgtaaaaatgttattctcttctcaatgattttgcatatatggtgtaatcattgaaatggtaaagagttagtgaagcaaccaacaatccagcttcaatactcaatccaaatttttatctttcctttgcctgatcagccttacgattgtagaagtttgtgtttgtgtttgaatgagcag

Basic information

species Arabidopsis thaliana
transcript AT1G75510.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G75510.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA04G03030.1 (Glycine max), 5'ss of exon 4
GTTATTGATAATGACCGCGGAGTTCATATGAGGCCCATGCCTGGAATGCTTGGTTTAGTTTCCTCCAATTCCAAGgtaaaaatgttattctcttctcaatgattttgcatatatggtgtaatcattgaaatggtaaagagttagtgaagcaaccaacaatccagcttcaatactcaatccaaatttttatctttcctttgcctgatcagccttacgattgtagaagtttgtgtttgtgtttgaatgagcag
||||||||||||||||| |||||||  |||||||| |||||||||||| ||||| ||||||| |||||||| |||||| | |   |||    |   | ||   || |   | ||| ||  | |||     |  |  ||| |   |              |   ||||   | |       |  |||||  |                                                            
GTTATTGATAATGACCGGGGAGTTCTAATGAGGCCAATGCCTGGAATGATTGGTCTAGTTTCATCCAATTCTAAGgtacataatgtatagaatctcctatctcttgg---acatgttgctaacatgcttgtaattgagactctatc-------------ttttgcttt--tgcctgtatgaggtttttggcca----------------------------------------------------------

upper sequence: AT1G75510.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA06G03070.1 (Glycine max), 5'ss of exon 4
GTTATTGATAATGACCGCGGAGTTCATATGAGGCCCATGCCTGGAATGCTTGGTTTAGTTTCCTCCAATTCCAAGgtaaaaatgttattctcttctcaatgattttgcatatatggtgtaatcattgaaatggtaaagagttagtgaagcaaccaacaatccagcttcaatactcaatccaaatttttatctttcctttgcctgatcagccttacgattgtagaagtttgtgtttgtgtttgaatgagcag
||||| |||||||| || |||||||  |||||||| |||||||||||| ||||| ||||||| ||||||||||||||| | |   |||          |  || | | || | |    |   |||     || |||   | | || ||   ||   | |||         ||||      | ||||||  |                                                            
GTTATCGATAATGATCGGGGAGTTCTAATGAGGCCAATGCCTGGAATGATTGGTCTAGTTTCATCCAATTCCAAGgtacataatgtat----------acaatctcgtatctgt----tggacat---gttgctaacatgcttgt-aattgactctctatctgttgcttttacttgtatgagatttttggcca----------------------------------------------------------

upper sequence: AT1G75510.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv18s0001g13370.t01 (Vitis vinifera), 5'ss of exon 4
GTTATTGATAATGACCGCGGAGTTCATATGAGGCCCATGCCTGGAATGCTTGGTTTAGTTTCCTCCAATTCCAAGgtaaaaatgttattctcttctcaatgattttgcatatatggtgtaatcattgaaatggtaaagagttagtgaagcaaccaacaatccagcttcaatactcaatccaaatttttatctttcctttgcctgatcagccttacgattgtagaagtttgtgtttgtgtttgaatgagcag
|| ||||| |||||||| ||||| ||||||||||| |||||||||||| ||||| |  || | |||||||| ||||||   |  ||  | ||||  ||    || |||   | | ||  || |||  ||   |     | || ||     ||||     |   |    ||| |   | | |                                                                      
GTGATTGACAATGACCGTGGAGTGCATATGAGGCCTATGCCTGGAATGGTTGGTCTGATTGCATCCAATTCTAAGgtattcacctt-ctgtcttggcaccatttatgccactttagttaaaacataaaacatgctgctaatttgtattagaacc--tggtttgga---aattcctgaacta----------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164019193|gb|ES195871.1|ES195871
EST:     AATGCTTGGTTTAGTTTCCTCCAATTCCAAG                         GAAAAGTAGGTAAACCTCCCCCAGTCAAGCAAACCGAGGTGAAGAGGACGA
genomic: AATGCTTGGTTTAGTTTCCTCCAATTCCAAGgtaaaaatgt ... gaatgagcagGAAAAG-AGG-AAACCTCCCCCAGTCAAGCAAACCGAGGTGAAGAGGACGA
EST: gi|124861548|gb|EH945985.1|EH945985
EST:     ATATGAGGCCCATGCCTGGAATGCTTGGTTTAGTTTCCTCCAATTCCAAG                         GAAAAGAGGAAACCTCCCC-AGTCAAGCAA
genomic: ATATGAGGCCCATGCCTGGAATGCTTGGTTTAGTTTCCTCCAATTCCAAGgtaaaaatgt ... gaatgagcagGAAAAGAGGAAACCTCCCCCAGTCAAGCAA
EST: gi|86078006|gb|DR373763.1|DR373763
EST:     ATATGAGGCCCATGCCTGGAATGCTTGGTTTAGTTTCCTCCAATTCCAAG                         GAAAAGAGGAAACCTCCCCCAGTCAAGCAAACCGAGGTGAAGAGGACGAGG
genomic: ATATGAGGCCCATGCCTGGAATGCTTGGTTTAGTTTCCTCCAATTCCAAGgtaaaaatgt ... gaatgagcagGAAAAGAGGAAACCTCCCCCAGTCAAGCAAACCGAGGTGAAGAGGACGAGG