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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGCTATACCTCTGAGATCTGAAGGGAAAAGCTCTGGAACAGTTTTGCCTTTTGTTGGTGTTGCTTGTCTTGGTGCTATACTCTTTGGTTATCATCTCGGgtatgactaaatactacactgtttttatcttggtgtgatcatggatgatgatgttctattggactgaatcag

Basic information

species Arabidopsis thaliana
transcript AT5G16150.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G16150.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GRMZM2G098011_T02 (Zea mays), 5'ss of exon 3
AAGCTATACCTCTGAGATCTGAAGGGAAAAGCTCTGGAACAGTTTTGCCTTTTGTTGGTGTTGCTTGTCTTGGTGCTATACTCTTTGGTTATCATCTCGGgtatg-actaaat----actacactgtttttatcttggtgtgatcat-ggatgatg-atgttctattggactg-aatcag------------------------------------------------------------------------------------------------------------
|   |  ||    ||    | |||  |||  ||| |||   ||| |||| | |||||||||||||||| | || ||||| || |||||||||||||| ||||||| |||  ||    ||||||   |  || | |       |  || |||| | | ||  | || || | |  |||                                                                                                               
ATATTCCACTGGAGAAGGTTCAAGTTAAATCCTCAGGACATGTTATGCCATATGTTGGTGTTGCTTGTTTGGGGGCTATTCTGTTTGGTTATCATCTTGGgtatgtactttatcactactacaagatgattgtttcttaaacacaattggataaagcataatttactgcattttaattgatgaaaatgaataacaagctgaaaataaaatagttccatcttttctgcacttatcttgtgaacacaaaaactgttagataataccaggaatccatttcatggaatgtag

upper sequence: AT5G16150.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA13G07780.1 (Glycine max), 5'ss of exon 3
AAGCTATACCTCTGAGATCTGAAGGGAAAAGCTCTGGAACAGTTTTGCCTTTTGTTGGTGTTGCTTGTCTTGGTGCTATACTCTTTGGTTATCATCTCGGgtatgactaaatactacactgtttttatcttggt------gtgatcatggatgatgatgttctatt-ggactga-atcag---------------------
| | | | ||    |   || | || |||   |||||||  ||| | || | ||||||||||||||| || || || ||  | ||||||||||||||||||||||  ||    || || | ||  ||| | |||         || ||| |  |||   || | || |  |||  |||                       
ATGTTGTTCCAGCTACTCCTCAGGGCAAATCTTCTGGAAATGTTCTACCATATGTTGGTGTTGCTTGCCTCGGAGCCATTTTATTTGGTTATCATCTCGGgtatggatagcctcttca-tattagtatgtgggtcaatggacaataatgcagcatgtcattttctttgtgctgccatctaagttataaaaatgatatgagt

upper sequence: AT5G16150.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv14s0006g02720.t01 (Vitis vinifera), 5'ss of exon 3
AAGCT-ATACCTCTGAGATCTGAAGGGAAAAGCTCTGGAACAGTTTTGCCTTTTGTTGGTGTTGCTTGTCTTGGTGCTATACTCTTTGGTTATCATCTCGGgtatgact------------aaatactacactgtttttatct------tggtgtgatcatggat-gatgatgttctattggactgaatcag---------
| | | ||  | |||    |  | || |||   ||||||||||||||||| |||||||||||||||||||| || || || || |||||||||||||| ||||||||||            |||||  |  || ||| |||||      |  ||  ||| |  ||  | ||  ||  |||    |  | ||          
ATGTTGATGTCACTGCT-CCCCAGGGCAAATCTTCTGGAACAGTTTTGCCATTTGTTGGTGTTGCTTGTCTGGGAGCAATTCTGTTTGGTTATCATCTAGGgtatgactgatttatcttagaaatagcatgctttttctatctgttaaattctgaaatcttcaattaaagaatttgaatttcctttcaccatttatacact