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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTGTTATGGAGGGATGGATGTTGGTGGTGGTTCGATGATTCTTGGCGGTTTTGATTATCCATCTGATATGGTGTTTACGGACTCGGACCCTGATCGTAGgtatgtttccaagggaatggctttttctgattggtgaatgggatcttgtataatcctaacaaatacgtttaatacctttcacacatttactctagtttcgggatggcgacag

Basic information

species Arabidopsis thaliana
transcript AT3G50050.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G50050.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA01G39800.1 (Glycine max), 5'ss of exon 6
TGTGTTATGGAGGGATGGATGTTGGTGGTGGTTCGATGATTCTTGGCGGTTTTGATTATCCATCTGATATGGTGTTTACGGACTCGGACCCTGATCGTAGgtatgtttccaagggaatggctttttctgattggtgaatgggatcttgtataatcctaacaaatacgtttaatacctttcacacatttactctagtttcgggatggcgacag
|||| ||||| || |||| ||||||||||||| | ||| ||||||| ||  |   |   ||| |||| ||||| |||||    || || |||| ||| |||| |||  |      |||  ||| ||   || | |    |   || || ||  || |||||||| | ||| ||   | ||||||||||||||||||||||||||||||||||
TGTGCTATGGTGGAATGGGTGTTGGTGGTGGTGCTATGGTTCTTGGTGGCATATCTCCCCCAGCTGACATGGTCTTTACACGTTCAGATCCTGTTCGAAGgtgtgtgcc-----aaatttcttatttc-atagatatgagatgtcatgcattttcttaacaaatgcatttgattaatctcacacatttactctagtttcgggatggcgacag

upper sequence: AT3G50050.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA17G17990.1 (Glycine max), 5'ss of exon 3
TGTGTTATGGAGGGATGGATGTTGGTGGTGGTTCGATGATTCTTGGCGGTTTTGATTATCCATCTGATATGGTGTTTACGGACTCGGACCCTGATCGTAGgtatgtttccaagggaatggctttttctgattggtgaatgggatcttgtataatcctaacaaatacgtttaatacctttcacacatttactctagtttcgggatggcgacag
| || ||||| || |||||||||||||| ||| | ||| |||| || ||  |   |   ||||| || ||||  ||| |  | || || |||| |||||||| |||||| ||         ||| |||  | | |    |   |  || ||  || |||||||| | ||| ||   | |||||||||||||||||||||||| |||||||||
TATGCTATGGTGGAATGGATGTTGGTGGGGGTGCAATGGTTCTCGGTGGCATATCTCCCCCATCAGACATGGCTTTTGCATATTCAGATCCTGTTCGTAGgtgtgtttcaaaac------ttttatcttctagatatgagatgtaatgcattttcttaacaaatgcattttattaatctcacacatttactctagtttcggggtggcgacag

upper sequence: AT3G50050.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA11G05490.1 (Glycine max), 5'ss of exon 3
TGTGTTATGGAGGGATGGATGTTGGTGGTGGTTCGATGATTCTTGGCGGTTTTGATTATCCATCTGATATGGTGTTTACGGACTCGGACCCTGATCGTAGgtatgtttccaagggaatggctttttctgattggtgaatgggatcttgtataatcctaacaaatacgtttaatacctttcacacatttactctagtttcgggatggcgacag
|||| ||||| || |||| ||||||||| ||| | ||| ||||||| ||  |   |   ||| |||| ||||| |||||  | || || |||| ||| |||| ||| ||      |||  ||| || | || | |    |   || || ||  || |||||||| | ||| ||   | |||||||||||||||||||| |||||||||||||
TGTGCTATGGTGGAATGGGTGTTGGTGGGGGTGCTATGGTTCTTGGTGGCATATCTCCCCCAGCTGACATGGTCTTTACACATTCAGATCCTGTTCGAAGgtgtgtgtc-----aaatttcttatttt-atagatatgagatgtcatgcattttcttaacaaatgcatttgattaatctcacacatttactctagttttgggatggcgacag

upper sequence: AT3G50050.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA05G21800.1 (Glycine max), 5'ss of exon 3
TGTGTTATGGAGGGATGGATGTTGGTGGTGGTTCGATGATTCTTGGCGGTTTTGATTATCCATCTGATATGGTGTTTACGGACTCGGACCCTGATCGTAGgtatgtttccaagggaatggctttttctgattggtgaatgggatcttgtataatcctaacaaatacgtttaatacctttcacacatttactctagtttcgggatggcgacag
| || ||||| || |||||||||||||| ||| | ||| |||| || ||  |   |  |||||| || |||   ||| |  | || || |||||||| |||| |||||| ||   | |    | ||||   |     |||  ||   | ||  || |||||||| | ||| ||   | |||||||||||||||||||||||| |||| ||||
TATGCTATGGTGGAATGGATGTTGGTGGGGGTGCAATGGTTCTCGGTGGCATATCTCCTCCATCAGACATGACTTTTGCATATTCAGATCCTGATCGCAGgtgtgtttcaaa---attcttatcttctagatatgagatgtaat---gcattttcttaacaaatgcattttattaatctcacacatttactctagtttcggggtggcaacag