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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTGATCGGAAATTTCGGTTCTTCTTCTTCGTTTTCTACTTCAATCGTTCTCGCTTTTGATTTCTTCAAGTTCTGATGATGATTATCGgtaaatttcaaccttggatctttggtagattttgctgttgtctcgtgaatattcatcgccagttttggcgggaaaatgtttctgcggtggtttgtttttgattgaatctgaaacttactattgtcttgtgctctcgattacattcttcag

Basic information

species Arabidopsis thaliana
transcript AT5G64540.3
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116432288|gb|EG474880.1|EG474880
EST:     CTTCAATCGTTCTCGCTTTTGATTTCTTCAAGTTCTGATGATGATTATCG                         ATCTTATCGGAAAGCTTTAGCGGCAGAGAGAAAGAGTGAATAAGTCGAGAC
genomic: CTTCAATCGTTCTCGCTTTTGATTTCTTCAAGTTCTGATGATGATTATCGgtaaatttca ... cattcttcagATCTTATCGGAAAGCTTTAGCGGCAGAGAGAAAGAGTGAATAAGTCGAGAC
EST: gi|116432283|gb|EG474875.1|EG474875
EST:     TCAAGTTCTGACGATGATTATCG                         ATCTTATCGGAAAGCTTTAGCGGCAGAGAGAAAGAGTGAATAAGTCGAGAC
genomic: TCAAGTTCTGATGATGATTATCGgtaaatttca ... cattcttcagATCTTATCGGAAAGCTTTAGCGGCAGAGAGAAAGAGTGAATAAGTCGAGAC
EST: gi|116432277|gb|EG474869.1|EG474869
EST:     CTTCAATCGTTCTCGCTTTTGATTTCTTCAAGTTCTGATGATGATTATCG                         ATCTTATCGGAAAGCTTTAGCGGCAGAGAGAAAGAGTGAATAAGTCGAGAC
genomic: CTTCAATCGTTCTCGCTTTTGATTTCTTCAAGTTCTGATGATGATTATCGgtaaatttca ... cattcttcagATCTTATCGGAAAGCTTTAGCGGCAGAGAGAAAGAGTGAATAAGTCGAGAC
EST: gi|116432286|gb|EG474878.1|EG474878
EST:     GCTTTTGATTTCTTCAAGTTCTGATGATGATTATCG                         ATCTTATCGGAAAGCTTTAGCGGCAGAGAGAAAGAGTGAATAAGTCGAGAC
genomic: GCTTTTGATTTCTTCAAGTTCTGATGATGATTATCGgtaaatttca ... cattcttcagATCTTATCGGAAAGCTTTAGCGGCAGAGAGAAAGAGTGAATAAGTCGAGAC