1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
ATGATCTTATCCTTTGAGCTCCCGTTTGCGTTGGTTCCTCTTCTCAAATTCACAAGTTGCAAAACCAAGATGGGTTCACATGTCAACCCAATGGCGgtatgtaataatcaaacacattttcattcaaagatgagatactttgatcatctctgacttcatatatatgttccctttcttcacag
species | Arabidopsis thaliana |
transcript | AT1G80830.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: AATTCACAAGTTGCAAAACCAAGATGGGTTCACATGTCAACCCAATGGCG ATTACAGCTTTGACTTGGGTCATTGGTGGTTTAATCATEST: gi|164088780|gb|ES086309.1|ES086309
genomic: AATTCACAAGTTGCAAAACCAAGATGGGTTCACATGTCAACCCAATGGCGgtatgtaata ... ttcttcacagATTACAGCTTTGACTTGGGTCATTGGTGGTTTAATCAT
EST: AATTCACAAGTTGCAAAACCAAGATGGGTTCACATGTCAACCCAATGGCG ATTACAGCTTTGACTTGGGTCATTGGTGGTTTAATCATGGGAAEST: gi|86085916|gb|DR381675.1|DR381675
genomic: AATTCACAAGTTGCAAAACCAAGATGGGTTCACATGTCAACCCAATGGCGgtatgtaata ... ttcttcacagATTACAGCTTTGACTTGGGTCATTGGTGGTTTAATCATGGGAA
EST: AATTCACAAGTTGCAAAACCAAGATGGGTTCACATGTCAACCCAATGGCG ATTACAGCTTTGACTTGGGTCATTGGTGGTTTAATCATGGGAATAAACATAEST: gi|125225061|gb|EL239146.1|EL239146
genomic: AATTCACAAGTTGCAAAACCAAGATGGGTTCACATGTCAACCCAATGGCGgtatgtaata ... ttcttcacagATTACAGCTTTGACTTGGGTCATTGGTGGTTTAATCATGGGAATAAACATA
EST: CAAAACCAAAGATGGGTTCACATGTCAACCCAATGGCG ATTACAGCTTTGACTTGGGTCATTGGTGGTTTAATCATGGGAATAAACATA
genomic: CAAAACC-AAGATGGGTTCACATGTCAACCCAATGGCGgtatgtaata ... ttcttcacagATTACAGCTTTGACTTGGGTCATTGGTGGTTTAATCATGGGAATAAACATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGATCTTATCCTTTGAGCTCCCGTTTGCGTTGGTTCCTCTTCTCAAATTCACAAGTTGCAAAACCAAGATGGGTTCACATGTCAACCCAATGGCGgtatgtaataatcaaacacattttcattcaaagatgagatactttgatcatctctgacttcatatatatgttccctttcttcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG