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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatgactactagtgatctaatagctacattcataggcatgaagaatcaaagtatgtaacctgataatcatttggtacttcatatgcagTCTCGTGCACTGGGTATGATTCGCTCACATGTGTTGTCAATACTTAAAGGTGCTTCATCCCAG

Basic information

species Zea mays
transcript GRMZM5G825854_T02
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G825854_T01 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os08g34970.1 (Oryza sativa), 3'ss of exon 9
gtaaatgactactagtgatctaatagctacattcataggcatgaagaatcaaagtatgtaacctgataatcatttggtacttcatatgcagTCTCGTGCACTGGGTATGATTCGCTCACATGTGTTGTCAATACTTAAAGGTGCTTCATCCCAG
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gtaaaggtctact--tgaattga--actacatggatagtcatcacaggttagatactttgacctgataattatatgcttcttttattgcagTCTCGTGCATTAGGTATGATTCGGTCACATGTCCTGTCAATACTTAAAGCCGCTTCATCCCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22489923|gb|BU049846.1|BU049846
EST:     CGCAATATGCTGAATCTGCTGTTTATTTGGTCAAATTTCGCCAACTTCAA                         TCTCGTGCACTGGGTATGATTCGCTCACATGTGTTGTCAATACTTAAAGGT
genomic: CGCAATATGCTGAATCTGCTGTTTATTTGGTCAAATTTCGCCAACTTCAAgtaaatgact ... tcatatgcagTCTCGTGCACTGGGTATGATTCGCTCACATGTGTTGTCAATACTTAAAGGT
EST: gi|211066409|gb|FL073783.1|FL073783
EST:     CGCAATATGCTGAATCTGCTGTTTATTTGGTCAAATTTCGCCAACTTCAA                         TCTCGTGCACTGGGTATGATTCGCTCACATGTGTTGTCAATACTTAAAGGT
genomic: CGCAATATGCTGAATCTGCTGTTTATTTGGTCAAATTTCGCCAACTTCAAgtaaatgact ... tcatatgcagTCTCGTGCACTGGGTATGATTCGCTCACATGTGTTGTCAATACTTAAAGGT
EST: gi|18450702|gb|BM428980.1|BM428980
EST:     GCAATATGCTGAATCTGCTNGTT-ATTTGGTCAAATTTCGCCAACTTCAA                         TCTCGTGCACTGGGTATGATTCGCTCACATGTGTTGTCAATACTTAAAGGT
genomic: GCAATATGCTGAATCTGCT-GTTTATTTGGTCAAATTTCGCCAACTTCAAgtaaatgact ... tcatatgcagTCTCGTGCACTGGGTATGATTCGCTCACATGTGTTGTCAATACTTAAAGGT
EST: gi|148952057|gb|EC897846.2|EC897846
EST:     CGCAATATGCTGAATCTGCTGTTTATTTGGTCAAATTTCGCCAACTTCAA                         TCTCGTGCACTGGGTATGATTCGCTCACATGTGTTGTCAATACTTAAAG
genomic: CGCAATATGCTGAATCTGCTGTTTATTTGGTCAAATTTCGCCAACTTCAAgtaaatgact ... tcatatgcagTCTCGTGCACTGGGTATGATTCGCTCACATGTGTTGTCAATACTTAAAG
EST: gi|91872014|gb|EB401971.1|EB401971
EST:     CGCAATATGCTGAATCTGCTGTTTATTTGGTCAAATTTCGCCAACTTCAA                         TCTCGTGCACTGGGTATGATTCGCTCACATGTGTTGTCAATACTTAAAGGT
genomic: CGCAATATGCTGAATCTGCTGTTTATTTGGTCAAATTTCGCCAACTTCAAgtaaatgact ... tcatatgcagTCTCGTGCACTGGGTATGATTCGCTCACATGTGTTGTCAATACTTAAAGGT
EST: gi|87153442|gb|DY398231.1|DY398231
EST:     CGCAATATGCTGAATCTGCTGTTTATTTGGTCAAATTTCGCCAACTTCAA                         TCTCGTGCACTGGGTATGATTCGCTCACATGTGTTGTCAATACTTAAAGGT
genomic: CGCAATATGCTGAATCTGCTGTTTATTTGGTCAAATTTCGCCAACTTCAAgtaaatgact ... tcatatgcagTCTCGTGCACTGGGTATGATTCGCTCACATGTGTTGTCAATACTTAAAGGT
EST: gi|32859413|gb|CD999094.1|CD999094
EST:     CGCAATATGCTGAATCTGCTGTTTATTTGGTCAAATTTCGCCAACTTCAA                         TCTCGTGCACTGGGTATGATTCGCTCACATGTGTTGTCAATACTTAAAGGT
genomic: CGCAATATGCTGAATCTGCTGTTTATTTGGTCAAATTTCGCCAACTTCAAgtaaatgact ... tcatatgcagTCTCGTGCACTGGGTATGATTCGCTCACATGTGTTGTCAATACTTAAAGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aggcatgaagaatcaaagtatgtaacctgataatcatttggtacttcatatgcagTCTCGTGCACTGGGTATGATTCGCTCACATGTGTTGTCAATACTTAAAGGTGCTTCATCCCAG
                             ataatcattt  TA-rich tract