1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...ttctgggagcttctattattagtagcttcatgcaggaatataatatctttttgatggaatggaacaatggtgaagtaataaagccagcttttttctgcagACTCTGGAAATGACAAGCGAAGTGGTCGATTTCTTGAGAGGGATATTCAACATGTTTGACATTGATAAT
species | Zea mays |
transcript | GRMZM2G004459_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGCTTAGGGATGATCTCATTGCAATGCCAATTAAAAGAGCTCCTGATCAA ACTCTGGAAATGACAAGCGAAGTGGTCGATTTCTTGAGAGGGATATTCAACEST: gi|60340644|gb|DN207617.1|DN207617
genomic: AGCTTAGGGATGATCTCATTGCAATGCCAATTAAAAGAGCTCCTGATCAAgtatgttttt ... ttttctgcagACTCTGGAAATGACAAGCGAAGTGGTCGATTTCTTGAGAGGGATATTCAAC
EST: AGCTTAGGGATGATCTCATTGCAATGCCAATTAAAAGAGCTCCTGATCAA ACTCTGGAAATGACAAGCGAAGTGGTCGATTTCTTGAGAGGGATATTCAACEST: gi|60354705|gb|DN221678.1|DN221678
genomic: AGCTTAGGGATGATCTCATTGCAATGCCAATTAAAAGAGCTCCTGATCAAgtatgttttt ... ttttctgcagACTCTGGAAATGACAAGCGAAGTGGTCGATTTCTTGAGAGGGATATTCAAC
EST: AGCTTAGGGATGATCTCATTGCAATGCCAATTAAAAGAGCTCCTGATCAA ACTCTGGAAATGACAAGCGAAGTGGTCGATTTCTTGAGAGGGATATTCAACEST: gi|31358133|gb|CD442490.1|CD442490
genomic: AGCTTAGGGATGATCTCATTGCAATGCCAATTAAAAGAGCTCCTGATCAAgtatgttttt ... ttttctgcagACTCTGGAAATGACAAGCGAAGTGGTCGATTTCTTGAGAGGGATATTCAAC
EST: AGCTTAGGGATGATCTCATTGCAATGCCAATTAAAAGAGCTCTTGATCAA ACTCTGGAAATGACAAGCGAAGTGGTCGATTTCTTGAGAGGGATATTCAAC
genomic: AGCTTAGGGATGATCTCATTGCAATGCCAATTAAAAGAGCTCCTGATCAAgtatgttttt ... ttttctgcagACTCTGGAAATGACAAGCGAAGTGGTCGATTTCTTGAGAGGGATATTCAAC
tctttttgatggaatggaacaatggtgaagtaataaagccagcttttttctgcagACTCTGGAAATGACAAGCGAAGTGGTCGATTTCTTGAGAGGGATATTCAACATGTTTGACATTGATAAT
ttttgat putative branch site (score: 134)
cttttttctgc putative PPT
aagtaataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttctgggagcttctattattagtagcttcatgcaggaatataatatctttttgatggaatggaacaatggtgaagtaataaagccagcttttttctgcagACTCTGGAAATGACAAGCGAAGTGGTCGATTTCTTGAGAGGGATATTCAACATGTTTGACATTGATAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG