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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtgtgatcatgtatattagactgcagtgcattccttatgtgttgcttactacaccactgacagccttgcgctctgcgcgttggagaaagctaacaagtaaatattcatcgtatgcgcagAACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG

Basic information

species Zea mays
transcript GRMZM2G553379_T06
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148980412|gb|EE027123.2|EE027123
EST:     AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAG                         AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
genomic: AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAGgtagtgtgat ... gtatgcgcagAACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
EST: gi|71316728|gb|DR795038.1|DR795038
EST:     AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAG                         AACCAACTTATGCTCGAGTCA
genomic: AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAGgtagtgtgat ... gtatgcgcagAACCAACTTATGCTCGAGTCA
EST: gi|18659149|gb|BM500180.1|BM500180
EST:     ACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATTCAGAACCAGGAAG                         AACCAACTTTATGCTCGAGTTCAATT
genomic: ACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATAT-CAGAACCAGGAAGgtagtgtgat ... gtatgcgcagAACCAACTT-ATGCTCGAGT-CAATT
EST: gi|78081870|gb|DV510282.1|DV510282
EST:     AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAG                         AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
genomic: AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAGgtagtgtgat ... gtatgcgcagAACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
EST: gi|76020108|gb|DT947278.1|DT947278
EST:     AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAG                         AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
genomic: AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAGgtagtgtgat ... gtatgcgcagAACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
EST: gi|148958634|gb|EC904889.2|EC904889
EST:     AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAG                         AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
genomic: AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAGgtagtgtgat ... gtatgcgcagAACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
EST: gi|50323594|gb|CO518720.1|CO518720
EST:     AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAG                         AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAA
genomic: AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAGgtagtgtgat ... gtatgcgcagAACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAA
EST: gi|9731862|gb|BE510614.1|BE510614
EST:     AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAG                         AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACAGAAG
genomic: AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAGgtagtgtgat ... gtatgcgcagAACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
EST: gi|149083437|gb|EE172757.2|EE172757
EST:     AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAG                         AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
genomic: AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAGgtagtgtgat ... gtatgcgcagAACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
EST: gi|67016868|gb|CO445617.1|CO445617
EST:     AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAG                         AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCA-CGGAAAG
genomic: AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAGgtagtgtgat ... gtatgcgcagAACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAA-G
EST: gi|76292652|gb|DV032220.1|DV032220
EST:     AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAG                         AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
genomic: AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAGgtagtgtgat ... gtatgcgcagAACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
EST: gi|91052802|gb|EB163220.1|EB163220
EST:     AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAG                         AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
genomic: AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAGgtagtgtgat ... gtatgcgcagAACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
EST: gi|71316727|gb|DR795037.1|DR795037
EST:     AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAG                         AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
genomic: AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAGgtagtgtgat ... gtatgcgcagAACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
EST: gi|50325933|gb|CO521059.1|CO521059
EST:     AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAG                         AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
genomic: AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAGgtagtgtgat ... gtatgcgcagAACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
EST: gi|148958084|gb|EC904274.2|EC904274
EST:     AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAG                         AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
genomic: AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAGgtagtgtgat ... gtatgcgcagAACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
EST: gi|71425444|gb|DR806674.1|DR806674
EST:     AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAG                         AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
genomic: AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAGgtagtgtgat ... gtatgcgcagAACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
EST: gi|86468156|gb|DY234526.1|DY234526
EST:     AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAG                         AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
genomic: AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAGgtagtgtgat ... gtatgcgcagAACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
EST: gi|33466538|gb|CF243587.1|CF243587
EST:     AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAG                         AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
genomic: AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAGgtagtgtgat ... gtatgcgcagAACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
EST: gi|37424944|gb|CF650206.1|CF650206
EST:     AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAG                         AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
genomic: AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAGgtagtgtgat ... gtatgcgcagAACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
EST: gi|50324243|gb|CO519369.1|CO519369
EST:     AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAG                         AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
genomic: AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAGgtagtgtgat ... gtatgcgcagAACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
EST: gi|71306905|gb|DR789608.1|DR789608
EST:     AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAG                         AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
genomic: AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAGgtagtgtgat ... gtatgcgcagAACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
EST: gi|91876123|gb|EB406080.1|EB406080
EST:     AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAG                         AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
genomic: AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAGgtagtgtgat ... gtatgcgcagAACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
EST: gi|88749401|gb|DY533542.1|DY533542
EST:     AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAG                         AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
genomic: AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAGgtagtgtgat ... gtatgcgcagAACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
EST: gi|148980413|gb|EE027124.2|EE027124
EST:     AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGAAAG                         AACCTACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
genomic: AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAGgtagtgtgat ... gtatgcgcagAACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
EST: gi|89248658|gb|DY620444.1|DY620444
EST:     AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAG                         AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
genomic: AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAGgtagtgtgat ... gtatgcgcagAACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
EST: gi|50333588|gb|CO528714.1|CO528714
EST:     AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAG                         AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
genomic: AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAGgtagtgtgat ... gtatgcgcagAACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
EST: gi|76291866|gb|DV031434.1|DV031434
EST:     AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAG                         AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
genomic: AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAGgtagtgtgat ... gtatgcgcagAACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
EST: gi|87156609|gb|DY401398.1|DY401398
EST:     AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAG                         AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACAGAAG
genomic: AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAGgtagtgtgat ... gtatgcgcagAACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
EST: gi|71325988|gb|DR799676.1|DR799676
EST:     AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAG                         AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
genomic: AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAGgtagtgtgat ... gtatgcgcagAACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
EST: gi|78088355|gb|DV516748.1|DV516748
EST:     AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAG                         AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
genomic: AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAGgtagtgtgat ... gtatgcgcagAACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
EST: gi|211128460|gb|FL066357.1|FL066357
EST:     AACTAGATCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAG                         AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACAGAAG
genomic: AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAGgtagtgtgat ... gtatgcgcagAACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
EST: gi|149001052|gb|EE038303.2|EE038303
EST:     AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAG                         AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
genomic: AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAGgtagtgtgat ... gtatgcgcagAACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
EST: gi|101396804|gb|EB820328.1|EB820328
EST:     AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAG                         AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
genomic: AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAGgtagtgtgat ... gtatgcgcagAACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
EST: gi|50323593|gb|CO518719.1|CO518719
EST:     AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAG                         AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
genomic: AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAGgtagtgtgat ... gtatgcgcagAACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
EST: gi|71440936|gb|DR821986.1|DR821986
EST:     AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAG                         AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
genomic: AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAGgtagtgtgat ... gtatgcgcagAACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
EST: gi|211020971|gb|FL097345.1|FL097345
EST:     AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAG                         AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACAGAAG
genomic: AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAGgtagtgtgat ... gtatgcgcagAACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
EST: gi|76292653|gb|DV032221.1|DV032221
EST:     AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAG                         AACCAACTTATGCTCGAGTCAATTTTCG-AGCTCAAACGGAAG
genomic: AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAGgtagtgtgat ... gtatgcgcagAACCAACTTATGCTCGAGTCAATTT-CGGAGCTCCAACGGAAG
EST: gi|78082314|gb|DV510726.1|DV510726
EST:     ACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCCAGGAAG                         ACCCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAGG
genomic: ACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACC-AGGAAGgtagtgtgat ... gtatgcgcagAACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAGG
EST: gi|71325989|gb|DR799677.1|DR799677
EST:     AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAG                         AACCAACTTATGCTCGAGTCAATTTCGGAGCTCC
genomic: AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAGgtagtgtgat ... gtatgcgcagAACCAACTTATGCTCGAGTCAATTTCGGAGCTCC
EST: gi|76011021|gb|DT938191.1|DT938191
EST:     AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAG                         AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
genomic: AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAGgtagtgtgat ... gtatgcgcagAACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
EST: gi|22935963|gb|BU572238.1|BU572238
EST:     AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAG                         AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACAGAAG
genomic: AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAGgtagtgtgat ... gtatgcgcagAACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
EST: gi|149079784|gb|EE168783.2|EE168783
EST:     AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAG                         AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
genomic: AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAGgtagtgtgat ... gtatgcgcagAACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
EST: gi|76927299|gb|DV171231.1|DV171231
EST:     AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAG                         AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
genomic: AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAGgtagtgtgat ... gtatgcgcagAACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
EST: gi|76927298|gb|DV171230.1|DV171230
EST:     AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAG                         AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
genomic: AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAGgtagtgtgat ... gtatgcgcagAACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
EST: gi|74242354|gb|DT650268.1|DT650268
EST:     AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAG                         AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAA
genomic: AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAGgtagtgtgat ... gtatgcgcagAACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAA
EST: gi|211128458|gb|FL066355.1|FL066355
EST:     AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAG                         AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACAGAAG
genomic: AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAGgtagtgtgat ... gtatgcgcagAACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
EST: gi|26559940|gb|CA832175.1|CA832175
EST:     AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAG                         AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACAGAAGGA
genomic: AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAGgtagtgtgat ... gtatgcgcagAACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAGGA
EST: gi|86470069|gb|DY236439.1|DY236439
EST:     AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAG                         AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
genomic: AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAGgtagtgtgat ... gtatgcgcagAACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
EST: gi|50329666|gb|CO524792.1|CO524792
EST:     AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAG                         AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
genomic: AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAGgtagtgtgat ... gtatgcgcagAACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
EST: gi|78088356|gb|DV516749.1|DV516749
EST:     AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAG                         AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCTACGNAAG
genomic: AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAGgtagtgtgat ... gtatgcgcagAACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
EST: gi|76280608|gb|DV020176.1|DV020176
EST:     AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAG                         AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
genomic: AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAGgtagtgtgat ... gtatgcgcagAACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
EST: gi|74232112|gb|DT640026.1|DT640026
EST:     AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAG                         AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
genomic: AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAGgtagtgtgat ... gtatgcgcagAACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
EST: gi|74242353|gb|DT650267.1|DT650267
EST:     AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAG                         AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
genomic: AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAGgtagtgtgat ... gtatgcgcagAACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
EST: gi|76291867|gb|DV031435.1|DV031435
EST:     AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAG                         AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
genomic: AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAGgtagtgtgat ... gtatgcgcagAACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
EST: gi|9952819|gb|BE639402.1|BE639402
EST:     AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAG                         AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACAGAAG
genomic: AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAGgtagtgtgat ... gtatgcgcagAACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
EST: gi|149008922|gb|EE041142.2|EE041142
EST:     AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAG                         AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
genomic: AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAGgtagtgtgat ... gtatgcgcagAACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
EST: gi|149001051|gb|EE038302.2|EE038302
EST:     AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAG                         AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
genomic: AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAGgtagtgtgat ... gtatgcgcagAACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
EST: gi|74238830|gb|DT646744.1|DT646744
EST:     AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAG                         AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
genomic: AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAGgtagtgtgat ... gtatgcgcagAACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
EST: gi|89757241|gb|DY686923.1|DY686923
EST:     AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAG                         AACCAACTTATGC
genomic: AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAGgtagtgtgat ... gtatgcgcagAACCAACTTATGC
EST: gi|149083438|gb|EE172758.2|EE172758
EST:     AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCANGAAG                         AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
genomic: AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAGgtagtgtgat ... gtatgcgcagAACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
EST: gi|86467441|gb|DY233811.1|DY233811
EST:     AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAG                         AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
genomic: AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAGgtagtgtgat ... gtatgcgcagAACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
EST: gi|71302369|gb|DR787302.1|DR787302
EST:     AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAG                         AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
genomic: AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAGgtagtgtgat ... gtatgcgcagAACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
EST: gi|74244253|gb|DT652167.1|DT652167
EST:     AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAG                         AACCAACTTATGCTCGAGT
genomic: AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAGgtagtgtgat ... gtatgcgcagAACCAACTTATGCTCGAGT
EST: gi|76913832|gb|DV165272.1|DV165272
EST:     AACTAGAGCAGCAGCGGGAGAGTTCACTGAAACATATCAGAACCAGGAAG                         ACCCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
genomic: AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAGgtagtgtgat ... gtatgcgcagAACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgcgctctgcgcgttggagaaagctaacaagtaaatattcatcgtatgcgcagAACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG
                       agctaac  putative branch site (score: 2)
                          taacaagtaaatatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtagtgtgatcatgtatattagactgcagtgcattccttatgtgttgcttactacaccactgacagccttgcgctctgcgcgttggagaaagctaacaagtaaatattcatcgtatgcgcagAACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT