1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttacatgttgaggtttcccttgcttgttttattttattttggcctgcacaaagctggactcgatgatctcccactaattttgttggcaatttatttacagGAGTCTTGATGATGTTAGAATGAACCTTGAAGTTCTCAAATACTGTGCTACAGTTCTGTTCCTG
species | Zea mays |
transcript | GRMZM2G134903_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATGGCAAGCTTGGCAAATTACTTTGGACTAGGGAAGCAAAGACACAG GAGTCTTGATGATGTTAGAATGAACCTTGAAGTTCTCATATACTGTGCTACEST: gi|78079191|gb|DV507603.1|DV507603
genomic: ATGGCAAGCTTGGCAAATTACTTTGGACTAGGGAAGCAAAGACACAGgttggtatcg ... ttatttacagGAGTCTTGATGATGTTAGAATGAACCTTGAAGTTCTCAAATACTGTGCTAC
EST: ATGGCAAGCTTGGCAAATTACTTTGGACTAGGGAAGCAAAGACACAG GAGTCTTGATGATGTTAGAATGAACCTTGAAGTTCTCAAATACTGTGCTAC
genomic: ATGGCAAGCTTGGCAAATTACTTTGGACTAGGGAAGCAAAGACACAGgttggtatcg ... ttatttacagGAGTCTTGATGATGTTAGAATGAACCTTGAAGTTCTCAAATACTGTGCTAC
gcacaaagctggactcgatgatctcccactaattttgttggcaatttatttacagGAGTCTTGATGATGTTAGAATGAACCTTGAAGTTCTCAAATACTGTGCTACAGTTCTGTTCCTG
cactaat putative branch site (score: 29)
tttattt putative PPT
aatttatttaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttacatgttgaggtttcccttgcttgttttattttattttggcctgcacaaagctggactcgatgatctcccactaattttgttggcaatttatttacagGAGTCTTGATGATGTTAGAATGAACCTTGAAGTTCTCAAATACTGTGCTACAGTTCTGTTCCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - atgttga
- - - - - - - - - - tgcttgt
- - - - - - - - - - - - - - - - - - - - -gcctgca
- - - - - - - - - - - - - - - - - - - - - - - - - - gctggac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttgttg