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21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
...ttacctaactgttctacttcagagtacagagaaccttacctaaatgtaaactggagaaaaaggttctgaagtatttctttatgcctctctttggccgcagGACAAATATAGTTGAGGCTCATATACAGCTGCATTCCCTTCTGAAGTCGGAGTACTCTAGTGAAGAAATGCAATCCATCGGTATGTTGCCGATACCTGAC
species | Zea mays |
transcript | GRMZM5G825854_T02 |
intron # | 24 |
splice site | 3' |
intron type | U2 |
EST: TTGTATTTGCAAAATCCATCTACTCGGATGATCTTATTCAAACCTATCAA GACAAATATAGTTGAGGCTCATATACAGCTGCATTCCCTTCTGAAGTCGGAEST: gi|37383203|gb|CF628592.1|CF628592
genomic: TTGTATTTGCAAAATCCATCTACTCGGATGATCTTATTCAAACCTATCAAgtatggatat ... ttggccgcagGACAAATATAGTTGAGGCTCATATACAGCTGCATTCCCTTCTGAAGTCGGA
EST: TTGTATTTGCAAAATCCATCTACTCGGATGATCTTATTCAAACCTATCAA GACAAATATAGTTGAGGCTCATATACAGCTGCATTCCCTTCTGAAGTCGGAEST: gi|37389357|gb|CF631898.1|CF631898
genomic: TTGTATTTGCAAAATCCATCTACTCGGATGATCTTATTCAAACCTATCAAgtatggatat ... ttggccgcagGACAAATATAGTTGAGGCTCATATACAGCTGCATTCCCTTCTGAAGTCGGA
EST: TTGTATTTGCAAAATCCATCTACTCGGATGATCTTATTCAAACCTATCAA GACAAATATAGTTGAGGCTCATATACAGCTGCATTCCCTTCTGAAGTCGGAEST: gi|86468964|gb|DY235334.1|DY235334
genomic: TTGTATTTGCAAAATCCATCTACTCGGATGATCTTATTCAAACCTATCAAgtatggatat ... ttggccgcagGACAAATATAGTTGAGGCTCATATACAGCTGCATTCCCTTCTGAAGTCGGA
EST: TTGTATTTGCAAAATCCATCTACTCGGATGATCTTATTCAAACCTATCAA GACAAATATAGTTGAGGCTCATATACAGCTGCATTCCCTTCTGAAGTCGGAEST: gi|93281266|gb|EB673530.1|EB673530
genomic: TTGTATTTGCAAAATCCATCTACTCGGATGATCTTATTCAAACCTATCAAgtatggatat ... ttggccgcagGACAAATATAGTTGAGGCTCATATACAGCTGCATTCCCTTCTGAAGTCGGA
EST: TTGTATTTGCAAAATCCATCTACTCGGATGATCTTATTCAAACCTATCAA GACAAATATAGTTGAGGTTCATATACAGCTGCATTCCCTTCTGAAGTCGGAEST: gi|6194992|gb|AW147096.1|AW147096
genomic: TTGTATTTGCAAAATCCATCTACTCGGATGATCTTATTCAAACCTATCAAgtatggatat ... ttggccgcagGACAAATATAGTTGAGGCTCATATACAGCTGCATTCCCTTCTGAAGTCGGA
EST: TTGTATTTGCAAAATCCATCTACTCGGATGATCTTATTCAAACCTATCAA GACAAATATAGTTGAGGCTCATATACAGCTGCATTCCCTTCTGAAGTCGGAEST: gi|211226277|gb|FK968324.1|FK968324
genomic: TTGTATTTGCAAAATCCATCTACTCGGATGATCTTATTCAAACCTATCAAgtatggatat ... ttggccgcagGACAAATATAGTTGAGGCTCATATACAGCTGCATTCCCTTCTGAAGTCGGA
EST: TTGTATTTGCAAAATCCATCTACTCGGATGATCTTATTCAAACCTATCAA GACAAATATAGTTGAGGCTCATATACAGCTGCATTCCCTTCTGAAGTCGGAEST: gi|211285685|gb|FL478243.1|FL478243
genomic: TTGTATTTGCAAAATCCATCTACTCGGATGATCTTATTCAAACCTATCAAgtatggatat ... ttggccgcagGACAAATATAGTTGAGGCTCATATACAGCTGCATTCCCTTCTGAAGTCGGA
EST: TTGTATTTGCAAAATCCATCTACTCGGATGATCTTATTCAAACCTATCAA GACAAATATAGTTGAGGCTCATATACAGCTGCATTCCCTTCTGAAGTCGGAEST: gi|60348401|gb|DN215374.1|DN215374
genomic: TTGTATTTGCAAAATCCATCTACTCGGATGATCTTATTCAAACCTATCAAgtatggatat ... ttggccgcagGACAAATATAGTTGAGGCTCATATACAGCTGCATTCCCTTCTGAAGTCGGA
EST: TTGTATTTGCAAAATCCATCTACTCGGATGATCTTATTCAAACCTATCAA GACAAATATAGTTGAGGCTCATATACAGCTGCATTCCCTTCTGAAGTCGGAEST: gi|32929996|gb|CF034808.1|CF034808
genomic: TTGTATTTGCAAAATCCATCTACTCGGATGATCTTATTCAAACCTATCAAgtatggatat ... ttggccgcagGACAAATATAGTTGAGGCTCATATACAGCTGCATTCCCTTCTGAAGTCGGA
EST: TTGTATTTGCAAAATCCATCTACTCGGATGATCTTATTCAAACCTATCAA GACAAATATAGTTGAGGCTCATATACAGCTGCATTCCCTTCTGAAGTCGGAEST: gi|67025660|gb|CO454409.1|CO454409
genomic: TTGTATTTGCAAAATCCATCTACTCGGATGATCTTATTCAAACCTATCAAgtatggatat ... ttggccgcagGACAAATATAGTTGAGGCTCATATACAGCTGCATTCCCTTCTGAAGTCGGA
EST: TTGTATTTGCAAAATCCATCTACTCGGATGATCTTATTCAAACCTATCAA GACAAATATAGTTGAGGCTCATATACAGCTGCATTCCCTTCTGAAGTCGGAEST: gi|211224224|gb|FK968323.1|FK968323
genomic: TTGTATTTGCAAAATCCATCTACTCGGATGATCTTATTCAAACCTATCAAgtatggatat ... ttggccgcagGACAAATATAGTTGAGGCTCATATACAGCTGCATTCCCTTCTGAAGTCGGA
EST: TTGTATTTGCAAAATCCATCTACTCGGATGATCTTATTCAAACCTATCAA GACAAATATAGTTGAGGCTCATATACAGCTGCATTCCCTTCTGAAGTCGGAEST: gi|4776079|gb|AI665082.1|AI665082
genomic: TTGTATTTGCAAAATCCATCTACTCGGATGATCTTATTCAAACCTATCAAgtatggatat ... ttggccgcagGACAAATATAGTTGAGGCTCATATACAGCTGCATTCCCTTCTGAAGTCGGA
EST: TTGTATTTGCAAAATCCATCTACTCGGATGATTTTATTCAAACCTATCAA GACAAATATAGTTGAGGCTCATATCCAGCTGCATTCCCTTCTGAAGTCGGAEST: gi|71432707|gb|DR813757.1|DR813757
genomic: TTGTATTTGCAAAATCCATCTACTCGGATGATCTTATTCAAACCTATCAAgtatggatat ... ttggccgcagGACAAATATAGTTGAGGCTCATATACAGCTGCATTCCCTTCTGAAGTCGGA
EST: TTGTATTTGCAAAATCCATCTACTCGGATGATCTTATTCAAACCTATCAA GACAAATATAGTTGAGGCTCATATACAGCTGCATTCCCTTCTGAAGTCGGAEST: gi|60348441|gb|DN215414.1|DN215414
genomic: TTGTATTTGCAAAATCCATCTACTCGGATGATCTTATTCAAACCTATCAAgtatggatat ... ttggccgcagGACAAATATAGTTGAGGCTCATATACAGCTGCATTCCCTTCTGAAGTCGGA
EST: TTGTATTTGCAAAATCCATCTACTCGGATGATCTTATTCAAACCTATCAA GACAAATATAGTTGAGGCTCATATACAGCTGCATTCCCTTCTGAAGTCGGAEST: gi|60341619|gb|DN208592.1|DN208592
genomic: TTGTATTTGCAAAATCCATCTACTCGGATGATCTTATTCAAACCTATCAAgtatggatat ... ttggccgcagGACAAATATAGTTGAGGCTCATATACAGCTGCATTCCCTTCTGAAGTCGGA
EST: TTGTATTTGCAAAATCCATCTACTCGGATGATCTTATTCAAACCTATCAA GACAAATATAGTTGAGGCTCATATACAGCTGCATTCCCTTCTGAAGTCGGAEST: gi|60340575|gb|DN207548.1|DN207548
genomic: TTGTATTTGCAAAATCCATCTACTCGGATGATCTTATTCAAACCTATCAAgtatggatat ... ttggccgcagGACAAATATAGTTGAGGCTCATATACAGCTGCATTCCCTTCTGAAGTCGGA
EST: TTGTATTTGCAAAATCCATCTACTCGGATGATCTTATTCAAACCTATCAA GACAAATATAGTTGAGGCTCATATACAGCTGCATTCCCTTTTGAAGTCGGAEST: gi|149104240|gb|EE289676.2|EE289676
genomic: TTGTATTTGCAAAATCCATCTACTCGGATGATCTTATTCAAACCTATCAAgtatggatat ... ttggccgcagGACAAATATAGTTGAGGCTCATATACAGCTGCATTCCCTTCTGAAGTCGGA
EST: TTGTATTTGCAAAATCCATCTACTCGGATGATCTTATTCAAACCTATCAA GACAAATATAGTTGAGGCTCATATACAGCTGCATTCCCTTCTGAAGTCGGAEST: gi|211362787|gb|FL472151.1|FL472151
genomic: TTGTATTTGCAAAATCCATCTACTCGGATGATCTTATTCAAACCTATCAAgtatggatat ... ttggccgcagGACAAATATAGTTGAGGCTCATATACAGCTGCATTCCCTTCTGAAGTCGGA
EST: TTGTATTTGCAAAATCCATCTACTCGGATGATCTTATTCAAACCTATCAA GACAAATATAGTTGAGGCTCATATACAGCTGCATTCCCTTCTGAAGTCGGAEST: gi|148953559|gb|EC898910.2|EC898910
genomic: TTGTATTTGCAAAATCCATCTACTCGGATGATCTTATTCAAACCTATCAAgtatggatat ... ttggccgcagGACAAATATAGTTGAGGCTCATATACAGCTGCATTCCCTTCTGAAGTCGGA
EST: TTGTATTTGCAAAATCCATCTACTCGGATGATTTTATTCAAACCTATCAA GACAAATATAGTTGAGGCTCATATACAGCTGCATTCCCTTTTGAAGTCGGAEST: gi|71432706|gb|DR813756.1|DR813756
genomic: TTGTATTTGCAAAATCCATCTACTCGGATGATCTTATTCAAACCTATCAAgtatggatat ... ttggccgcagGACAAATATAGTTGAGGCTCATATACAGCTGCATTCCCTTCTGAAGTCGGA
EST: TTGTATTTGCAAAATCCATCTACTCGGATGATCTTATTCAAACCTATCAA GACAAATATAGTTGAGGCTCATATACAGCTGCATTCCCTTCTGAAGTCGGAEST: gi|211224223|gb|FK968322.1|FK968322
genomic: TTGTATTTGCAAAATCCATCTACTCGGATGATCTTATTCAAACCTATCAAgtatggatat ... ttggccgcagGACAAATATAGTTGAGGCTCATATACAGCTGCATTCCCTTCTGAAGTCGGA
EST: TTGTATTTGCAAAATCCATCTACTCGGATGATCTTATTCAAACCTATCAA GACAAATATAGTTGAGGCTCATATACAGCTGCATTCCCTTCTGAAGTCGGA
genomic: TTGTATTTGCAAAATCCATCTACTCGGATGATCTTATTCAAACCTATCAAgtatggatat ... ttggccgcagGACAAATATAGTTGAGGCTCATATACAGCTGCATTCCCTTCTGAAGTCGGA
gtaaactggagaaaaaggttctgaagtatttctttatgcctctctttggccgcagGACAAATATAGTTGAGGCTCATATACAGCTGCATTCCCTTCTGAAGTCGGAGTACTCTAGTGAAGAAATGCAATCCATCGGTATGTTGCCGATACCTGAC
tatttctttatgcctc CT-rich tract
aagtatttctttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttacctaactgttctacttcagagtacagagaaccttacctaaatgtaaactggagaaaaaggttctgaagtatttctttatgcctctctttggccgcagGACAAATATAGTTGAGGCTCATATACAGCTGCATTCCCTTCTGAAGTCGGAGTACTCTAGTGAAGAAATGCAATCCATCGGTATGTTGCCGATACCTGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - agaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggttctg