1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...taataactatatagtagttggattgtttcttgttcattcagcttttatgatatgacctttttgattctgctgttaatattattattggatttacttacagAGGACAGACTAGCAGCTTTGAAGGCTAAGGACAAGAAGCATGGGGCAGAATCTGCAACTCCTGAACCCAACTCTGAGGTTCTCTTCCTGTGCAGCTACGA
species | Zea mays |
transcript | GRMZM5G885700_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGAACTGGTCGTCGCCGGAGGCCCCTGCGTGCTGTACAAGTGGGTGCGAG AGGACAGACTAGCAGCTTTGAAGGCTAAGGACAAGAAGCATGGGGCAGAATEST: gi|50329241|gb|CO524367.1|CO524367
genomic: AGAACTGGTCGTCGCCGGAGGCCCCTGCGTGCTGTACAAGTGGGTGCGAGgtgcgcggaa ... ttacttacagAGGACAGACTAGCAGCTTTGAAGGCTAAGGACAAGAAGCATGGGGCAGAAT
EST: AGAACTGGTCGTCGCCGGAGGCCCCTGCGTGCTGTACAAGTGGGTGCGAG AGGACAGACTAGCAGCTTTGAAGGCTAAGGACAAGAAGCATGGGGCAGAATEST: gi|89762364|gb|DY689981.1|DY689981
genomic: AGAACTGGTCGTCGCCGGAGGCCCCTGCGTGCTGTACAAGTGGGTGCGAGgtgcgcggaa ... ttacttacagAGGACAGACTAGCAGCTTTGAAGGCTAAGGACAAGAAGCATGGGGCAGAAT
EST: AGAACTGGTCGTCGCCGGAGGCCCCTGCGTGCTGTACAAGTGGGTGCGAG AGGACAGACTAGCAGCTTTGAAGGCTAAGGACAAGAAGCATGGGGCAGAATEST: gi|211050924|gb|FL038266.1|FL038266
genomic: AGAACTGGTCGTCGCCGGAGGCCCCTGCGTGCTGTACAAGTGGGTGCGAGgtgcgcggaa ... ttacttacagAGGACAGACTAGCAGCTTTGAAGGCTAAGGACAAGAAGCATGGGGCAGAAT
EST: AGAACTGGTCGTCGCCGGAGGCCCCTGCGTGCTGTACAAGTGGGTGCGAG AGGACAGACTAGCAGCTTTGAAGGCTAAGGACAAGAAGCATGGGGCAGAATEST: gi|71444956|gb|DR826006.1|DR826006
genomic: AGAACTGGTCGTCGCCGGAGGCCCCTGCGTGCTGTACAAGTGGGTGCGAGgtgcgcggaa ... ttacttacagAGGACAGACTAGCAGCTTTGAAGGCTAAGGACAAGAAGCATGGGGCAGAAT
EST: AGAACTGGTCGTCGCCGGAGGCCCCTGCGTGCTGTACAAGTGGGTGCGAG AGGACAGACTAGCAGCTTTGAAGGCTAAGGACAAGAAGCATGGGGCAGAATEST: gi|211050923|gb|FL038265.1|FL038265
genomic: AGAACTGGTCGTCGCCGGAGGCCCCTGCGTGCTGTACAAGTGGGTGCGAGgtgcgcggaa ... ttacttacagAGGACAGACTAGCAGCTTTGAAGGCTAAGGACAAGAAGCATGGGGCAGAAT
EST: AGAACTGGTCGTCGCCGGA--SCCCTGCGTGCTGTACAAGTGGGTGCGAG AGGACAGACTAGCAGCTTTGAAGGCTAAGGACAAGAAGCATGGGGCAGAATEST: gi|211484014|gb|FL012872.1|FL012872
genomic: AGAACTGGTCGTCGCCGGAGGCCCCTGCGTGCTGTACAAGTGGGTGCGAGgtgcgcggaa ... ttacttacagAGGACAGACTAGCAGCTTTGAAGGCTAAGGACAAGAAGCATGGGGCAGAAT
EST: AGAACTGGTCGTCGCCGGAGGCCCCTGCGTGCTGTACAAGTGGGTGCGAG AGGACAGACTAGCAGCTTTGAAGGCTAAGGACAAGAAGCATGGGGCAGAATEST: gi|71309036|gb|DR790783.1|DR790783
genomic: AGAACTGGTCGTCGCCGGAGGCCCCTGCGTGCTGTACAAGTGGGTGCGAGgtgcgcggaa ... ttacttacagAGGACAGACTAGCAGCTTTGAAGGCTAAGGACAAGAAGCATGGGGCAGAAT
EST: AGAACTGGTCGTCGCCGGAGGCCCCTGCGTGCTGTACAAGTGGGTGCGAG AGGACAGACTAGCAGCTTTGAAGGCTAAGGACAAGAAGCATGGGGCAGAATEST: gi|148935905|gb|EC879955.2|EC879955
genomic: AGAACTGGTCGTCGCCGGAGGCCCCTGCGTGCTGTACAAGTGGGTGCGAGgtgcgcggaa ... ttacttacagAGGACAGACTAGCAGCTTTGAAGGCTAAGGACAAGAAGCATGGGGCAGAAT
EST: AGAACTGGTCGTCGCCGGAGGCCCCTGCGTGCTGTACAAGTGGGTGCGAG AGGACAGACTATCAGCTTTGAAGGCTAAGGACAAGAAGCATGGGGCAGAAT
genomic: AGAACTGGTCGTCGCCGGAGGCCCCTGCGTGCTGTACAAGTGGGTGCGAGgtgcgcggaa ... ttacttacagAGGACAGACTAGCAGCTTTGAAGGCTAAGGACAAGAAGCATGGGGCAGAAT
tatgatatgacctttttgattctgctgttaatattattattggatttacttacagAGGACAGACTAGCAGCTTTGAAGGCTAAGGACAAGAAGCATGGGGCAGAATCTGCAACTCCTGAACCCAACTCTGAGGTTCTCTTCCTGTGCAGCTACGA
tgttaat putative branch site (score: 3)
tttactt putative PPT
tgttaatattattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taataactatatagtagttggattgtttcttgttcattcagcttttatgatatgacctttttgattctgctgttaatattattattggatttacttacagAGGACAGACTAGCAGCTTTGAAGGCTAAGGACAAGAAGCATGGGGCAGAATCTGCAACTCCTGAACCCAACTCTGAGGTTCTCTTCCTGTGCAGCTACGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - -tgtttct
- - - - - - - - - - - - - - - - - cattcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctgctg