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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcaactgtcttgcacgttaaattaattatgtgatgaacgatttttaacgcagttagtgtttgtctatacagGTGATTGGCACATGGCTTATATCTGCTTGTACAAAGCCCGCATGGCAGAATCAAAGAGTTAGGTCGAATTGGTTCTACATTTCTGTATTGCGAATGCAAC

Basic information

species Zea mays
transcript GRMZM2G028733_T01
intron # 17
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5608231|gb|AI901898.1|AI901898
EST:     CAATCCGAACATTCGCAAGGATGAAGACATTTTGAAACTTTCTGGTGGAG                         GTGATTGGCACATGGCTTATATCTGCTTGTACAAAGCCCGCATGGCAGAAT
genomic: CAATCCGAACATTCGCAAGGATGAAGACATTTTGAAACTTTCTGGTGGAGgtgagcaact ... gtctatacagGTGATTGGCACATGGCTTATATCTGCTTGTACAAAGCCCGCATGGCAGAAT
EST: gi|33094354|gb|CF054348.1|CF054348
EST:     CAATCCAAACATTCGCAAGGATGAAGACATTTTGAAACTTTCTGGTGGAG                         GTGATTGGCACATGGCTTATATCTGCTTGTAC
genomic: CAATCCGAACATTCGCAAGGATGAAGACATTTTGAAACTTTCTGGTGGAGgtgagcaact ... gtctatacagGTGATTGGCACATGGCTTATATCTGCTTGTAC
EST: gi|60354780|gb|DN221753.1|DN221753
EST:     CAATCCAAACATTCGCAAGGATGAAGACATTTTGAAACTTTCTGGTGGAG                         GTGATTGGCACATGGCTTATATCTGCTTGTACAAAGCCCGCATGGCAGAAT
genomic: CAATCCGAACATTCGCAAGGATGAAGACATTTTGAAACTTTCTGGTGGAGgtgagcaact ... gtctatacagGTGATTGGCACATGGCTTATATCTGCTTGTACAAAGCCCGCATGGCAGAAT
EST: gi|211276333|gb|FL459020.1|FL459020
EST:     CAATCCAAACATTCGCAAGGATGAAGACATTTTGAAACTTTCTGGTGGAG                         GTGATTGGCACATGGCTTATATCTGCTTGTACAAAGCCCGCATGGCAGAAT
genomic: CAATCCGAACATTCGCAAGGATGAAGACATTTTGAAACTTTCTGGTGGAGgtgagcaact ... gtctatacagGTGATTGGCACATGGCTTATATCTGCTTGTACAAAGCCCGCATGGCAGAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaaattaattatgtgatgaacgatttttaacgcagttagtgtttgtctatacagGTGATTGGCACATGGCTTATATCTGCTTGTACAAAGCCCGCATGGCAGAATCAAAGAGTTAGGTCGAATTGGTTCTACATTTCTGTATTGCGAATGCAAC
                         ttttaac  putative branch site (score: 2)
                                          tttgtct  putative PPT
     ttaattatgt  TA-rich tract