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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttcacaaacaataggttttctatctttaggtctttgtgcagctacagttttgtaattaatgtaaacttttctttaacctttctatctctctttttgccagATTGCAAATTTCCGTCCTTCTGTCGAAGATCTAGATTATCCTGGGAAACTTGAACGACCTGTGGATATGTCTTCAAGTGCTACT

Basic information

species Zea mays
transcript GRMZM5G825854_T02
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G825854_T01 (Zea mays), 3'ss of exon 15
lower sequence: LOC_Os08g34970.1 (Oryza sativa), 3'ss of exon 15
ttcacaaacaataggttttctatctttaggtctttgtgcagctacagttt--tgtaattaatgtaaacttttct-ttaacctttctatctctctttttgccagATTGCAAATTTCCGTCCTTCTGTCGAAGATCTAGATTATCCTGGGAAACTTGAACGACCTGTGGATATGTCTTCAAGTGCTACT
   |||| |   || |     ||      | ||||    |  ||  ||||  | || || || |    |||| | ||||  ||  | |||  || ||   ||||||||||| ||||| |||||||  |||||||| ||||||||||| || |||||  || | || |||    || ||||| ||| |
---acaatcttgagctcaggaatgaaggagacttttcttatatattgtttaatctatttcatctttttttttttgttaattttgttttcttactattgttcagATTGCAAACTTCCGCCCTTCTGATGAAGATCTGGATTATCCTGGAAAGCTTGAGAGATCCGTAGATGCAACTACAAGTTCTAAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32931070|gb|CF035882.1|CF035882
EST:     ATGTTCATGAGCGGCTAGCATTTTGTGCTCGGACTCATATCCGTGAAGAG                         ATTGCAAATTTCCGTCCTTCTGTCGAAGATCTAGATTATCCTGGGAAACTT
genomic: ATGTTCATGAGCGGCTAGCATTTTGTGCTCGGACTCATATCCGTGAAGAGgtagtgttct ... tttttgccagATTGCAAATTTCCGTCCTTCTGTCGAAGATCTAGATTATCCTGGGAAACTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttttgtaattaatgtaaacttttctttaacctttctatctctctttttgccagATTGCAAATTTCCGTCCTTCTGTCGAAGATCTAGATTATCCTGGGAAACTTGAACGACCTGTGGATATGTCTTCAAGTGCTACT
                         ctttaac  putative branch site (score: 3)
                    cttttctttaaccttt  CT-rich tract
       taattaatgtaaactt  TA-rich tract