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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggctcttctacgacaacacccttccacgccacgccctaaaaacaatagaatcttgtcgattagttcgctgagtttgatttttgctactgatgatgatgaagGGAGGTTTGACCCCCAAGGAGGAGGAGACGCTCCTGGCTTGCAATTTACTTCCTGGTGTTTATTTCATCGTGGGTTCAGTACTGGGCACTTTCGCGATGT

Basic information

species Zea mays
transcript GRMZM5G823750_T04
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29576943|gb|CB617055.1|CB617055
EST:     GGTGATCCAAGATCTGTACTACGCCTTGAGGACAAAG                         GGAGGTTTGACCCCCAAGGAGGAGGAGACGCTCCTGGCTTGCAATTTACTT
genomic: GGTGATCCAAGATCTGTACTACGCCTTGAGGACAAAGgtaggctctt ... gatgatgaagGGAGGTTTGACCCCCAAGGAGGAGGAGACGCTCCTGGCTTGCAATTTACTT
EST: gi|28361743|gb|CB240099.1|CB240099
EST:     TAACGAGGCAGGAGGTGATCCAAGATCTGTACTACGCCTTGAGGACAAAG                         GGAGGTTTGACCCCCAAGGAGGAGGAGACGCTCCTGGCTTGCAATTTACTT
genomic: TAACGAGGCAGGAGGTGATCCAAGATCTGTACTACGCCTTGAGGACAAAGgtaggctctt ... gatgatgaagGGAGGTTTGACCCCCAAGGAGGAGGAGACGCTCCTGGCTTGCAATTTACTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agaatcttgtcgattagttcgctgagtttgatttttgctactgatgatgatgaagGGAGGTTTGACCCCCAAGGAGGAGGAGACGCTCCTGGCTTGCAATTTACTTCCTGGTGTTTATTTCATCGTGGGTTCAGTACTGGGCACTTTCGCGATGT
                                      tactgat  putative branch site (score: 2)
                          tttgattttt  TA-rich tract