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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtggagctgttgcatggtgtccacttagaattatttaagttcttttcatagtttcctattttacttaaagtttatgccatgggagtatttaacatgaatcgttttttttcttggagactttagATGGTAATAAATACAGAGGTGGCATCTACATGGTTTTTGATTACATGGACCATGATTTAGCAGGCCTGTCTGATCGTCCTGGACTGAGATTTTCAATTCC

Basic information

species Vitis vinifera
transcript Vv07s0141g00280.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0141g00280.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT5G10270.1 (Arabidopsis thaliana), 3'ss of exon 4
gtgagtggagctgttgcatggtgtccacttagaattatttaagttcttttcatagtttcctattttacttaaagtttatgccatgggagtatttaacatgaatcgttttttttcttggagactttagATGGTAATAAATACAGAGGTGGCATCTACATGGTTTTTGATTACATGGACCATGATTTAGCAGGCCTGTCTGATCGTCCTGGACTGAGATTTTCAATTCC
                   | |    |   | | | |||| |  |  | || |||||||     ||| | |   ||| | |        ||  |||      | | |||||  | |        |||||  ||| |||||||  ||||||||||||||||||||||| |||||||| ||||||||  | || ||  | ||||||||||||||||||||| |  ||||
-------------------gtttgtgaaaaaaagtgatttcaactactgtcttagtttctg--cttattgaggatttcttct-------taactaaaggttgtggctttttcaccta-------tagATAATAACAAATACAAGGGTGGCATCTACATGGTTTTTGAGTACATGGATCATGATTTGACTGGACTAGCAGATCGTCCTGGACTGAGATTTACTGTTCC

upper sequence: Vv07s0141g00280.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT5G64960.2 (Arabidopsis thaliana), 3'ss of exon 3
gtgagtggagctgttgcatggtgtccacttagaattatttaagttcttttcatagtttcctattttact-taaagtttatgccatgggagtatttaacatgaatcgttttttttcttggagactttagATGGTAATAAATACAGAGGTGGCATCTACATGGTTTTTGATTACATGGACCATGATTTAGCAGGCCTGTCTGATCGTCCTGGACTGAGATTTTCAATTCC
            |||   ||      | | |  ||     |  || | |  | |  ||   ||   ||| | |    | |         |  |    | | || | | ||  || |     | |||||||  ||| |||||||  ||||| ||||||||||| ||||| |||||||| ||||| ||  | || ||  ||||||||||||||||||||||| |  ||||
------------gtta-gtgaaacttattcaagatcgaa-atattttctgtacaacttag-atgcgactatgagagatctatttaaactgcttacggcctaaagcttgttgcttttcttcaattttagATAATAACAAATACAAGGGTGGAATCTACATGGTCTTTGAGTACATGGATCATGACTTGACTGGACTTGCTGATCGTCCTGGACTGAGATTTACGGTTCC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtttatgccatgggagtatttaacatgaatcgttttttttcttggagactttagATGGTAATAAATACAGAGGTGGCATCTACATGGTTTTTGATTACATGGACCATGATTTAGCAGGCCTGTCTGATCGTCCTGGACTGAGATTTTCAATTCC
                  atttaac  putative branch site (score: 3)
                 tatttaacatgaat  TA-rich tract