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...ttgatgttttttcagaattttgttttcattttagtttgacaataaaggtgctcctgtatgaagtcctatcttaaggggaggtcgggattatatttctcagGTTGCCAAAATGTCTGGAACTGGTGGACAACTTTACTCAGCTCTGAGTAATAACCGGCCTTCTGAGGCTCAAATGTTGAAGGCGCTAATGCTGTTTTGCG
species | Physcomitrella patens |
transcript | PP1S98_14V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTTATGGAAATGGAAGACAACGAATGGCTCATTACTTTGTGGAAGCTCTG GTTGCCAAAATGTCTGGAACTGGTGGACAACTTTACTCAGCTCTGAGTAATEST: gi|100439770|gb|BY962099.1|BY962099
genomic: CTTATGGAAATGGAAGACAACGAATGGCTCATTACTTTGTGGAAGCTCTGgttagttttc ... tatttctcagGTTGCCAAAATGTCTGGAACTGGTGGACAACTTTACTCAGCTCTGAGTAAT
EST: CTTATGGAAATGGAAGACAACGAATGGCTCATTACTTTGTGGAAGCTCTG GTTGCCGAAATGTCTGGAACTGGTGGACAACTTTACTCAGCTCTGAGTAATEST: gi|162229574|gb|FC405895.1|FC405895
genomic: CTTATGGAAATGGAAGACAACGAATGGCTCATTACTTTGTGGAAGCTCTGgttagttttc ... tatttctcagGTTGCCAAAATGTCTGGAACTGGTGGACAACTTTACTCAGCTCTGAGTAAT
EST: CTTATGGAAATGGAAGACAACGAATGGCTCATTACTTTGTGGAAGCTCTG GTTGCCAAAATGTCTGGAACTGGTGGACAACTTTACTCAGCTCTGAGTAATEST: gi|162177139|gb|FC352568.1|FC352568
genomic: CTTATGGAAATGGAAGACAACGAATGGCTCATTACTTTGTGGAAGCTCTGgttagttttc ... tatttctcagGTTGCCAAAATGTCTGGAACTGGTGGACAACTTTACTCAGCTCTGAGTAAT
EST: CTTATGGAAATGGAAGACAACGAATGGCTCATTACTTTGTGGAAGCTCTG GTTGCCAAAATGTCTGGAACTGGTGGACAACTTTACTCAGCTCTGAGTAAT
genomic: CTTATGGAAATGGAAGACAACGAATGGCTCATTACTTTGTGGAAGCTCTGgttagttttc ... tatttctcagGTTGCCAAAATGTCTGGAACTGGTGGACAACTTTACTCAGCTCTGAGTAAT
aggtgctcctgtatgaagtcctatcttaaggggaggtcgggattatatttctcagGTTGCCAAAATGTCTGGAACTGGTGGACAACTTTACTCAGCTCTGAGTAATAACCGGCCTTCTGAGGCTCAAATGTTGAAGGCGCTAATGCTGTTTTGCG
tatttctc CT-rich tract
attatatttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgatgttttttcagaattttgttttcattttagtttgacaataaaggtgctcctgtatgaagtcctatcttaaggggaggtcgggattatatttctcagGTTGCCAAAATGTCTGGAACTGGTGGACAACTTTACTCAGCTCTGAGTAATAACCGGCCTTCTGAGGCTCAAATGTTGAAGGCGCTAATGCTGTTTTGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT