1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtaagcttcccccttatcattgagctctttttcgcggttcaagttctttgagataagttagacacgtgtacaagggacgaatatttgcacactcttatttgagtacttttctgcttgcaatttacataatgttcttatgaatacctgtgacctatgattacgtgtactgaggtttttcggttctattttgttgtagAGTGGCGTCTACTTCTGGACTGGAGAAATGGTCGTACGAGCCTTATGCATTTGGGGTAGATCCTGTTTGGCATGGATCCCGATCAGAGCTCCCATTTACC
species | Physcomitrella patens |
transcript | PP1S6_159V6.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GGAACGGCTTATAGGTGTCCTGACCCACAATACTCTGTTGAGAATTGCCC AGTGGCGTCTACTTCTGGACTEST: gi|162174814|gb|FC352230.1|FC352230
genomic: GGAACGGCTTATAGGTGTCCTGACCCACAATACTCTGTTGAGAATTGCCCgtaagcttcc ... tttgttgtagAGTGGCGTCTACTTCTGGACT
EST: GGAACGGCTTATAGGTGTCCTGACCCACAATACTCTGTTGAGAATTGCCC AGTGGCGTCTACTTCTGGACTGGAGAAATGGTCGTACEST: gi|162156043|gb|FC332210.1|FC332210
genomic: GGAACGGCTTATAGGTGTCCTGACCCACAATACTCTGTTGAGAATTGCCCgtaagcttcc ... tttgttgtagAGTGGCGTCTACTTCTGGACTGGAGAAATGGTCGTAC
EST: GGAACGGCTTATAGGTGTCCTGACCCACAATACTCTGTTGAGAATTGCCC AGTGGCGTCTACTTCTGGACTGGAGAAATGGTCGTACGAGCCTTATGCATT
genomic: GGAACGGCTTATAGGTGTCCTGACCCACAATACTCTGTTGAGAATTGCCCgtaagcttcc ... tttgttgtagAGTGGCGTCTACTTCTGGACTGGAGAAATGGTCGTACGAGCCTTATGCATT
tacctgtgacctatgattacgtgtactgaggtttttcggttctattttgttgtagAGTGGCGTCTACTTCTGGACTGGAGAAATGGTCGTACGAGCCTTATGCATTTGGGGTAGATCCTGTTTGGCATGGATCCCGATCAGAGCTCCCATTTACC
ttctatttt CT-rich tract
ttctatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcttcccccttatcattgagctctttttcgcggttcaagttctttgagataagttagacacgtgtacaagggacgaatatttgcacactcttatttgagtacttttctgcttgcaatttacataatgttcttatgaatacctgtgacctatgattacgtgtactgaggtttttcggttctattttgttgtagAGTGGCGTCTACTTCTGGACTGGAGAAATGGTCGTACGAGCCTTATGCATTTGGGGTAGATCCTGTTTGGCATGGATCCCGATCAGAGCTCCCATTTACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT