1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtcatttatcttgtttgacatgtttacatgctatggattatcttgtatagcctgctatggcttattttgtatcacctgcctaatctttgtgctggtatcatgttatagCCTATGCTCCAGGAACTGAGCAAGAAGAATCCTCAACTTCTGAGGTTGATTCAGGAGAACCATGATGAGTTCCTTCAGTTAATAAATGAGCCCTTTGATG
species | Oryza sativa |
transcript | LOC_Os02g08300.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TTTCAGGCGCTTCGGGAAATGGTTCATACTAACCCACAAATATTGCAG CCTATGCTCCAGGAACTGAGCAAGAAGAATCCTCAACTTCTGAGGTTGATTEST: gi|88980844|gb|CI022534.1|CI022534
genomic: TTTCAGGCGCTTCGGGAAATGGTTCATACTAACCCACAAATATTGCAGgtcatttatc ... catgttatagCCTATGCTCCAGGAACTGAGCAAGAAGAATCCTCAACTTCTGAGGTTGATT
EST: GGGAAATGGTTCATACTAACCCACAAATATTGCAG CCTATGCTCCAGGAACTGAGCAAGAAGAATCCTCAACTTCTGAGGTTGATTEST: gi|66923978|gb|CX110826.1|CX110826
genomic: GGGAAATGGTTCATACTAACCCACAAATATTGCAGgtcatttatc ... catgttatagCCTATGCTCCAGGAACTGAGCAAGAAGAATCCTCAACTTCTGAGGTTGATT
EST: TTTCAGGCGCTTCGGGAAATGGTTCATACTAACCCACAAATATTGCAG CCTATGCTCCAGGAACTGAGCAAGAAGAATCCTCAACTTCTGAGGTTGATTEST: gi|88966384|gb|CI119519.1|CI119519
genomic: TTTCAGGCGCTTCGGGAAATGGTTCATACTAACCCACAAATATTGCAGgtcatttatc ... catgttatagCCTATGCTCCAGGAACTGAGCAAGAAGAATCCTCAACTTCTGAGGTTGATT
EST: ACCCACAAATATTGCAG CCTATGCTCCAGGAACTGAGCAAGAAGAATCCTCAACTTCTGAGGTTGATTEST: gi|88991630|gb|CI019808.1|CI019808
genomic: ACCCACAAATATTGCAGgtcatttatc ... catgttatagCCTATGCTCCAGGAACTGAGCAAGAAGAATCCTCAACTTCTGAGGTTGATT
EST: TCGGGAAATGGTTCATACTAACCCACAAATATTGCAG CCTATGCTCCAGGAACTGAGCAAGAAGAATCCTCAACTTCTGAGGTTGATTEST: gi|58676620|gb|CK065307.1|CK065307
genomic: TCGGGAAATGGTTCATACTAACCCACAAATATTGCAGgtcatttatc ... catgttatagCCTATGCTCCAGGAACTGAGCAAGAAGAATCCTCAACTTCTGAGGTTGATT
EST: TTTCAGGCGCTTCGGGAAATGGTTCATACTAACCCACAAATATTGCAG CCTATGCTCCAGGAACTGAGCAAGAAGAATCCTCAACTTCTGAGGTTGATT
genomic: TTTCAGGCGCTTCGGGAAATGGTTCATACTAACCCACAAATATTGCAGgtcatttatc ... catgttatagCCTATGCTCCAGGAACTGAGCAAGAAGAATCCTCAACTTCTGAGGTTGATT
gctatggcttattttgtatcacctgcctaatctttgtgctggtatcatgttatagCCTATGCTCCAGGAACTGAGCAAGAAGAATCCTCAACTTCTGAGGTTGATTCAGGAGAACCATGATGAGTTCCTTCAGTTAATAAATGAGCCCTTTGATG
gcctaat putative branch site (score: 18)
ttattttgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcatttatcttgtttgacatgtttacatgctatggattatcttgtatagcctgctatggcttattttgtatcacctgcctaatctttgtgctggtatcatgttatagCCTATGCTCCAGGAACTGAGCAAGAAGAATCCTCAACTTCTGAGGTTGATTCAGGAGAACCATGATGAGTTCCTTCAGTTAATAAATGAGCCCTTTGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA