1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aaagcaagtaaacttgtttgacaccaccacctttagctgttcacataccccctaggtatttgtactccgtagtaatatgtgcaattggttgcaattgcagAATGAGGCGGCCCTAGAAGCAGCAACGGACTCTGGAAAGCAGGCATCTATCAAGGCCGCGGACAAGTATTCCAAGGAGATCCTTGGAAGGTTGAGCCGCG
species | Oryza sativa |
transcript | LOC_Os01g03760.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TGCTGAATCTCTTAAGGTGACTCTGAAGAACTTAAGGACTAAG AATGAGGCGGCCCTAGAAGCAGCAACGGACTCTGGAAAGCAGGCATCTATCEST: gi|218498275|gb|FG950557.1|FG950557
genomic: TGCTGAATCTCTTAAGGTGACTCTGAAGAACTTAAGGACTAAGgtatgatatg ... gcaattgcagAATGAGGCGGCCCTAGAAGCAGCAACGGACTCTGGAAAGCAGGCATCTATC
EST: AGCTCCGTGCTGAATCTCTTAAGGTGACTCTGAAGAACTTAAGGACTAAG AATGAGGCGGCCCTAGAAGCAGCAACGGACTCTGGAAAGCAGGCATCTATCEST: gi|27548128|gb|CA766270.2|CA766270
genomic: AGCTCAGTGCTGAATCTCTTAAGGTGACTCTGAAGAACTTAAGGACTAAGgtatgatatg ... gcaattgcagAATGAGGCGGCCCTAGAAGCAGCAACGGACTCTGGAAAGCAGGCATCTATC
EST: AGCTCAGTGCTGAATCTCTTAAGGTGACTCTGAAGAACTTAAGGACTAAG AATGAGGCGGCCCTAGAAGCAGCAACGGACTCTGGAAAGCAGGCATCTATCEST: gi|9055399|gb|AU097597.1|AU097597
genomic: AGCTCAGTGCTGAATCTCTTAAGGTGACTCTGAAGAACTTAAGGACTAAGgtatgatatg ... gcaattgcagAATGAGGCGGCCCTAGAAGCAGCAACGGACTCTGGAAAGCAGGCATCTATC
EST: AGCTCAGTGCTGAATCTCTTAA-GTGACTCTGAAGAACTTAAGGACTAAG AATGA-NCGCCCCTAGAANCAGCAACGGACTCTGGAAAGCAGNCATCTATCEST: gi|86498653|gb|CI141286.1|CI141286
genomic: AGCTCAGTGCTGAATCTCTTAAGGTGACTCTGAAGAACTTAAGGACTAAGgtatgatatg ... gcaattgcagAATGAGGCGGCCCTAGAAGCAGCAACGGACTCTGGAAAGCAGGCATCTATC
EST: TAAGGTGACTCTGAAGAACTTAAGGACTAAG AATGAGGCGGCCCTAGAAGCAGCAACGGACTCTGGAAAGCAGGCATCTATCEST: gi|88570918|gb|CI662291.1|CI662291
genomic: TAAGGTGACTCTGAAGAACTTAAGGACTAAGgtatgatatg ... gcaattgcagAATGAGGCGGCCCTAGAAGCAGCAACGGACTCTGGAAAGCAGGCATCTATC
EST: AGCTCAGCGCTGAATCTCTTAAGGTGACACTGAAGAACTTAAGGACTAAG AATGAGGCGGCCCTAGAAGCAGCAACGGACTCTGGAAAGCAGGCATCTATCEST: gi|88346801|gb|CI657352.1|CI657352
genomic: AGCTCAGTGCTGAATCTCTTAAGGTGACTCTGAAGAACTTAAGGACTAAGgtatgatatg ... gcaattgcagAATGAGGCGGCCCTAGAAGCAGCAACGGACTCTGGAAAGCAGGCATCTATC
EST: AGCTCAGTGCTGAATCTCTTAAGGTGACACTGAAGAACTTAAGGACTAAG AATGAGGCGGCCCTAGAAGCAGCAACGGACTCTGGAAAGCAGGCATCTATCEST: gi|38477248|gb|CF961381.1|CF961381
genomic: AGCTCAGTGCTGAATCTCTTAAGGTGACTCTGAAGAACTTAAGGACTAAGgtatgatatg ... gcaattgcagAATGAGGCGGCCCTAGAAGCAGCAACGGACTCTGGAAAGCAGGCATCTATC
EST: AGCTCAGTGCTGAATCTCTTAAGGTGACTCTGAAGAACTTAAGGACTAAG AATGAGGCGGCCCTAGAAGCAGCAACGGACTCTGGAAAGCAGGCATCTATCEST: gi|29645236|gb|CB650243.1|CB650243
genomic: AGCTCAGTGCTGAATCTCTTAAGGTGACTCTGAAGAACTTAAGGACTAAGgtatgatatg ... gcaattgcagAATGAGGCGGCCCTAGAAGCAGCAACGGACTCTGGAAAGCAGGCATCTATC
EST: AGCTCAGTGCTGAATCTCTTAAGGTGACTCTGAAGAACTTAAGGACTAAG AATGAGGCGGCCCTAGAAGCAGCAACGGACTCTGGAAAGCAGGCATCTATC
genomic: AGCTCAGTGCTGAATCTCTTAAGGTGACTCTGAAGAACTTAAGGACTAAGgtatgatatg ... gcaattgcagAATGAGGCGGCCCTAGAAGCAGCAACGGACTCTGGAAAGCAGGCATCTATC
taccccctaggtatttgtactccgtagtaatatgtgcaattggttgcaattgcagAATGAGGCGGCCCTAGAAGCAGCAACGGACTCTGGAAAGCAGGCATCTATCAAGGCCGCGGACAAGTATTCCAAGGAGATCCTTGGAAGGTTGAGCCGCG
tagtaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaagcaagtaaacttgtttgacaccaccacctttagctgttcacataccccctaggtatttgtactccgtagtaatatgtgcaattggttgcaattgcagAATGAGGCGGCCCTAGAAGCAGCAACGGACTCTGGAAAGCAGGCATCTATCAAGGCCGCGGACAAGTATTCCAAGGAGATCCTTGGAAGGTTGAGCCGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
aaagcaa
- - - - - - - tgtttga
- - - - - - - - - - -caccacc
- - - - - - - - - - - - - - - - - agctgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgtgc