1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtatgattccatatactttactgatcttgtgtaactgttacatgtcttaacatatagatcttaaattataatccctcttgtagTGTACAAGAAACACTACCCTCCTGCCCTAAAGGATGATGTTTGGAGATTGGAGAAGATTGGAAAGGATGGTGCATTTCACAAGAAGCTAAACTCAAATGG
species | Oryza sativa |
transcript | 13113.m00220 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TAAGGAGGCGAAAACGGAGGCTTTTACTGTTAAAGATCACAGAGGAGAAT TGTACAAGAAACACTACCCTCCTGCCCTAAAGGATGATGTTTGGAGATTGGEST: gi|86596775|gb|CI286688.1|CI286688
genomic: TAAGGAGGCGAAAACGGAGGCTTTTACTGTTAAAGATCACAGAGGAGAATgtatgattcc ... cctcttgtagTGTACAAGAAACACTACCCTCCTGCCCTAAAGGATGATGTTTGGAGATTGG
EST: AGGAGGCGAAAACGGAGGCTTTTACTGTTAAAGATCACAGAGGAGAAT TGTACAAGAAACACTACCCTCCTGCCCTAAAGGATGATGTTTGGAGATTGGEST: gi|58659064|gb|CK047744.1|CK047744
genomic: AGGAGGCGAAAACGGAGGCTTTTACTGTTAAAGATCACAGAGGAGAATgtatgattcc ... cctcttgtagTGTACAAGAAACACTACCCTCCTGCCCTAAAGGATGATGTTTGGAGATTGG
EST: TAAGGAGGCGAAAACGGAGGCTTTTACTGTTAAAGATCACAGAGGAGAAT TGTACAAGAAACACTACCCTCCTGCCCTAAAGGATGATGTTTGGAGATTGGEST: gi|29637477|gb|CB642486.1|CB642486
genomic: TAAGGAGGCGAAAACGGAGGCTTTTACTGTTAAAGATCACAGAGGAGAATgtatgattcc ... cctcttgtagTGTACAAGAAACACTACCCTCCTGCCCTAAAGGATGATGTTTGGAGATTGG
EST: TAAGGAGGCGAAAACGGAGGCTTTTACTGTTAAAGATCACAGAGGAGAAT TGTACAAGAAACACTACCCTCCTGCCCTAAAGGATGATGTTTGGAGATTGGEST: gi|66915738|gb|CX102586.1|CX102586
genomic: TAAGGAGGCGAAAACGGAGGCTTTTACTGTTAAAGATCACAGAGGAGAATgtatgattcc ... cctcttgtagTGTACAAGAAACACTACCCTCCTGCCCTAAAGGATGATGTTTGGAGATTGG
EST: TAAGGAGGCGAAAACGGAGGCTTTTACTGTTAAAGATCACAGAGGAGAAT TGTACAAGAAACACTACCCTCCTGCCCTAAAGGATGATGTTTGGAGATTGGEST: gi|29622953|gb|CB627964.1|CB627964
genomic: TAAGGAGGCGAAAACGGAGGCTTTTACTGTTAAAGATCACAGAGGAGAATgtatgattcc ... cctcttgtagTGTACAAGAAACACTACCCTCCTGCCCTAAAGGATGATGTTTGGAGATTGG
EST: TAAGGAGGCGAAAACGGAGGCTTTTACTGTTAAAGATCACAGAGGAGAAT TGTACAAGAAACACTACCCTCCTGCCCTAAAGGATGATGTTTGGAGATTGGEST: gi|58612983|gb|CK040695.1|CK040695
genomic: TAAGGAGGCGAAAACGGAGGCTTTTACTGTTAAAGATCACAGAGGAGAATgtatgattcc ... cctcttgtagTGTACAAGAAACACTACCCTCCTGCCCTAAAGGATGATGTTTGGAGATTGG
EST: TAAGGAGGCGAAAACGGAGGCTTTTACTGTTAAAGATCACAGAGGAGAAT TGTACAAGAAACACTACCCTCCTGCCCTAAAGGATGATGTTTGGAGATTGG
genomic: TAAGGAGGCGAAAACGGAGGCTTTTACTGTTAAAGATCACAGAGGAGAATgtatgattcc ... cctcttgtagTGTACAAGAAACACTACCCTCCTGCCCTAAAGGATGATGTTTGGAGATTGG
gtgtaactgttacatgtcttaacatatagatcttaaattataatccctcttgtagTGTACAAGAAACACTACCCTCCTGCCCTAAAGGATGATGTTTGGAGATTGGAGAAGATTGGAAAGGATGGTGCATTTCACAAGAAGCTAAACTCAAATGG
tcttaac putative branch site (score: 34)
tccctcttgt putative PPT
tcttaacatatagatc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgattccatatactttactgatcttgtgtaactgttacatgtcttaacatatagatcttaaattataatccctcttgtagTGTACAAGAAACACTACCCTCCTGCCCTAAAGGATGATGTTTGGAGATTGGAGAAGATTGGAAAGGATGGTGCATTTCACAAGAAGCTAAACTCAAATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC