1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgattccatttccccaccccaacaccaggtggaaactttgcctacggtgtctaatggaggaatccaaaattaatccgccatgaattgaatttttgcttgtgctggagcaattaagtagttggactccttggttaatcggttctgttcgttattgcttcagTCGATTGATAGGCTAGTTAGGTATGCTGAGTGGCCGCGCGGTGACGTTGCATCATAGAAGTGATTCGGGCGAACGTTTGGTAGGAAATGTGGTACCCGAT
species | Oryza sativa |
transcript | LOC_Os02g42730.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCACCGCTGGCCCAGCGCCGACTCCGAGTTCATCTCCTACCCGGCTTCAG TCGATTGATAGGCTAGTTAGGTATGCTGAGTGGCCGCGCGGTGACGTTGCAEST: gi|88760791|gb|CI770347.1|CI770347
genomic: CCACCGCTGGCCCAGCGCCGACTCCGAGTTCATCTCCTACCCGGCTTCAGgtgattccat ... attgcttcagTCGATTGATAGGCTAGTTAGGTATGCTGAGTGGCCGCGCGGTGACGTTGCA
EST: CCACCGCTGGCCCAGCGCCGACTCCGAGTTCATCTCCTACCCGGCTTCAG TCGATTGATAGGCTAGTTAGGTATGCTGAGTGGCCGCGCGGTGACGTTGCAEST: gi|88732034|gb|CI757211.1|CI757211
genomic: CCACCGCTGGCCCAGCGCCGACTCCGAGTTCATCTCCTACCCGGCTTCAGgtgattccat ... attgcttcagTCGATTGATAGGCTAGTTAGGTATGCTGAGTGGCCGCGCGGTGACGTTGCA
EST: CCACCGCTGGCCCAGCGCCGACTCCGAGTTCATCTCCTACCCGGCTTCAG TCGATTGATAGGCTAGTTAGGTATGCTGAGTGGCCGCGCGGTGACGTTGCAEST: gi|88346488|gb|CI637334.1|CI637334
genomic: CCACCGCTGGCCCAGCGCCGACTCCGAGTTCATCTCCTACCCGGCTTCAGgtgattccat ... attgcttcagTCGATTGATAGGCTAGTTAGGTATGCTGAGTGGCCGCGCGGTGACGTTGCA
EST: CCACCGCTGGCCCAGCGCCGACTCCGAGTTCATCTCCTACCCGGCTTCAG TCGATTGATAGGCTAGTTAGGTATGCTGAGTGGCCGCGCGGTGACGTTGCAEST: gi|88824960|gb|CI775525.1|CI775525
genomic: CCACCGCTGGCCCAGCGCCGACTCCGAGTTCATCTCCTACCCGGCTTCAGgtgattccat ... attgcttcagTCGATTGATAGGCTAGTTAGGTATGCTGAGTGGCCGCGCGGTGACGTTGCA
EST: CCACCGCTGGCCCAGCGCCGACTCCGAGTTCATCTCCTACCCGGCTTCAG TCGATTGATAGGCTAGTTAGGTATGCTGAGTGGCCGCGCGGTGACGTTGCAEST: gi|88744426|gb|CI767786.1|CI767786
genomic: CCACCGCTGGCCCAGCGCCGACTCCGAGTTCATCTCCTACCCGGCTTCAGgtgattccat ... attgcttcagTCGATTGATAGGCTAGTTAGGTATGCTGAGTGGCCGCGCGGTGACGTTGCA
EST: CCACCGCTGGCCCAGCGCCGACTCCGAGTTCATCTCCTACCCGGCTTCAG TCGATTGATAGGCTAGTTAGGTATGCTGAGTGGCCGCGCGGTGACGTTGCAEST: gi|88415461|gb|CI589053.1|CI589053
genomic: CCACCGCTGGCCCAGCGCCGACTCCGAGTTCATCTCCTACCCGGCTTCAGgtgattccat ... attgcttcagTCGATTGATAGGCTAGTTAGGTATGCTGAGTGGCCGCGCGGTGACGTTGCA
EST: CCACCGCTGGCCCAGCGCCGACTCCGAGTTCATCTCCTACCCGGCTTCAG TCGATTGATAGGCTAGTTAGGTATGCTGAGTGGCCGCGCGGTGACGTTGCAEST: gi|2428014|gb|C72477.1|C72477
genomic: CCACCGCTGGCCCAGCGCCGACTCCGAGTTCATCTCCTACCCGGCTTCAGgtgattccat ... attgcttcagTCGATTGATAGGCTAGTTAGGTATGCTGAGTGGCCGCGCGGTGACGTTGCA
EST: CCACCGCTGGCCCAGCGCCGACTCCGAGTTCATCTCCTACCCGGCTTCAG TCGATTGATAGGCTAGTTAGGTATGCTGAGTGGCCGCGCGGTGACGTTGCA
genomic: CCACCGCTGGCCCAGCGCCGACTCCGAGTTCATCTCCTACCCGGCTTCAGgtgattccat ... attgcttcagTCGATTGATAGGCTAGTTAGGTATGCTGAGTGGCCGCGCGGTGACGTTGCA
agcaattaagtagttggactccttggttaatcggttctgttcgttattgcttcagTCGATTGATAGGCTAGTTAGGTATGCTGAGTGGCCGCGCGGTGACGTTGCATCATAGAAGTGATTCGGGCGAACGTTTGGTAGGAAATGTGGTACCCGAT
ggttaat putative branch site (score: 2)
ttgcttc putative PPT
ttaagta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgattccatttccccaccccaacaccaggtggaaactttgcctacggtgtctaatggaggaatccaaaattaatccgccatgaattgaatttttgcttgtgctggagcaattaagtagttggactccttggttaatcggttctgttcgttattgcttcagTCGATTGATAGGCTAGTTAGGTATGCTGAGTGGCCGCGCGGTGACGTTGCATCATAGAAGTGATTCGGGCGAACGTTTGGTAGGAAATGTGGTACCCGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT