1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtacgtacgagccccccctcggccgagttactccctgctccgttgcgtggttttgtggtggtgattttggtggatgggatatgcctgcgttgcgtgcagCGGCGGTGGCGTGGGCGCCCGGTCAGGCGCTGGTGATGGAGGAGGTGGAGGTGGCGCCGCCGGAGGCCATGGAGATCCGCGTCAAGGTCGTCTCCACCTC
species | Oryza sativa |
transcript | LOC_Os02g42520.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGCCGGAATGGCCGCGGCGTCGTCTCCGGCGGCGGCCATCACCTGCCGAG CGGCGGTGGCGTGGGCGCCCGGTCAGGCGCTGGTGATGGAGGAGGTGGAGGEST: gi|88357025|gb|CI620913.1|CI620913
genomic: TGCCGGAATGGCCGCGGCGTCGTCTCCGGCGGCGGCCATCACCTGCCGAGgtacgtacga ... ttgcgtgcagCGGCGGTGGCGTGGGCGCCCGGTCAGGCGCTGGTGATGGAGGAGGTGGAGG
EST: TGCGGGAATGGCCGCGGCGTCGTCTCCGGCGGCGGCCATCACCTGCCGAG CGGCGGTGGCGTGGGCGCCCGGTCAGGCGCTGGTGATGGAGGAGGTGGAGGEST: gi|88372773|gb|CI612701.1|CI612701
genomic: TGCCGGAATGGCCGCGGCGTCGTCTCCGGCGGCGGCCATCACCTGCCGAGgtacgtacga ... ttgcgtgcagCGGCGGTGGCGTGGGCGCCCGGTCAGGCGCTGGTGATGGAGGAGGTGGAGG
EST: TGCCGGAATGGCCGCGGCGTCGTCTCCGGCGGCGGCCATCACCTGCCGAG CGGCGGTGGCGTGGGCGCCCGGTCAGGCGCTGGTGATGGAGGAGGTGGAGGEST: gi|58602019|gb|CK012547.1|CK012547
genomic: TGCCGGAATGGCCGCGGCGTCGTCTCCGGCGGCGGCCATCACCTGCCGAGgtacgtacga ... ttgcgtgcagCGGCGGTGGCGTGGGCGCCCGGTCAGGCGCTGGTGATGGAGGAGGTGGAGG
EST: TGCCGGAATGGCCGCGGCGTCGTCTCCGGCGGCGGCCATCACCTGCCGAG CGGCGGTGGCGTGGGCGCCCGGTCAGGCGCTGGTGATGGAGGAGGTGGAGGEST: gi|32948087|gb|BP184659.1|BP184659
genomic: TGCCGGAATGGCCGCGGCGTCGTCTCCGGCGGCGGCCATCACCTGCCGAGgtacgtacga ... ttgcgtgcagCGGCGGTGGCGTGGGCGCCCGGTCAGGCGCTGGTGATGGAGGAGGTGGAGG
EST: TGCCGGAATGGCCGCGGCGTCGTCTCCGGCGGCGGCCATCACCTGCCGAG CGGCGGTGGCGTGGGCGCCCGGTCAGGCGCTGGTGATGGAGGAGGTGGAGGEST: gi|88425441|gb|CI567161.1|CI567161
genomic: TGCCGGAATGGCCGCGGCGTCGTCTCCGGCGGCGGCCATCACCTGCCGAGgtacgtacga ... ttgcgtgcagCGGCGGTGGCGTGGGCGCCCGGTCAGGCGCTGGTGATGGAGGAGGTGGAGG
EST: TGCCGGAATGGCCGCGGCGTCGTCTCCGGCGGCGGCCATCACCTGCCGAG CGGCGGTGGCGTGGGCGCCCGGTCAGGCGCTGGTGATGGAGGAGGTGGAGGEST: gi|58658973|gb|CK047653.1|CK047653
genomic: TGCCGGAATGGCCGCGGCGTCGTCTCCGGCGGCGGCCATCACCTGCCGAGgtacgtacga ... ttgcgtgcagCGGCGGTGGCGTGGGCGCCCGGTCAGGCGCTGGTGATGGAGGAGGTGGAGG
EST: TGGCGGAATGGCCGCGGCGTCGTCTCCGGCGGCGGCCATCACCTGCCGAG CGGCGGTGGCGTGGGCGCCCGGTCAGGCGCTGGTGATGGAGGAGGTGGAGGEST: gi|29617893|gb|CB622905.1|CB622905
genomic: TGCCGGAATGGCCGCGGCGTCGTCTCCGGCGGCGGCCATCACCTGCCGAGgtacgtacga ... ttgcgtgcagCGGCGGTGGCGTGGGCGCCCGGTCAGGCGCTGGTGATGGAGGAGGTGGAGG
EST: TGCCGGAATGGCCGCGGCGTCGTCTCCGGCGGCGGCCATCACCTGCCGAG CGGCGGTGGCGTGGGCGCCCGGTCAGGCGCTGGTGATGGAGGAGGTGGAGG
genomic: TGCCGGAATGGCCGCGGCGTCGTCTCCGGCGGCGGCCATCACCTGCCGAGgtacgtacga ... ttgcgtgcagCGGCGGTGGCGTGGGCGCCCGGTCAGGCGCTGGTGATGGAGGAGGTGGAGG
gcgtggttttgtggtggtgattttggtggatgggatatgcctgcgttgcgtgcagCGGCGGTGGCGTGGGCGCCCGGTCAGGCGCTGGTGATGGAGGAGGTGGAGGTGGCGCCGCCGGAGGCCATGGAGATCCGCGTCAAGGTCGTCTCCACCTC
tgatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtacgagccccccctcggccgagttactccctgctccgttgcgtggttttgtggtggtgattttggtggatgggatatgcctgcgttgcgtgcagCGGCGGTGGCGTGGGCGCCCGGTCAGGCGCTGGTGATGGAGGAGGTGGAGGTGGCGCCGCCGGAGGCCATGGAGATCCGCGTCAAGGTCGTCTCCACCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC