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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagagtttatctattgttgcttttgaaaatgtcacttttactgttctttcaatatcgcgcaactcatgttttttcttcccgctctgtctaatgcaagtttgtattttcaacatgttccagGATTTATTGGCATGGCTCTCTCTTATGGCCTTTCACTTAACATGTCCTTAGTATTTTCAATTCAAAATCAATGCAACATAGCGAATTATATAATATCAGT

Basic information

species Glycine max
transcript GLYMA20G30490.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7591527|gb|AW707258.1|AW707258
EST:     ATCTGCGGCACTGTGCATGGTTGTACTTCCACCCGGAACTTTCTCCTCTG                         GATTTATTGGCATGGCTCTCTCTTATGGCCTATCACTTAACATGTCCTTAG
genomic: ATCTGCGGCACTGTGCATGGTTGTACTTCCACCCGGAACTTTCTCCTCTGgtgagagttt ... catgttccagGATTTATTGGCATGGCTCTCTCTTATGGCCTTTCACTTAACATGTCCTTAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgttttttcttcccgctctgtctaatgcaagtttgtattttcaacatgttccagGATTTATTGGCATGGCTCTCTCTTATGGCCTTTCACTTAACATGTCCTTAGTATTTTCAATTCAAAATCAATGCAACATAGCGAATTATATAATATCAGT
                    gtctaat  putative branch site (score: 3)
                                tttgtatttt  TA-rich tract