Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtatcactgaaattagtgaatacattttgaaaaatcaaggtgctctcaatagcacgagctaactttatcctgcttttttcagAATTGAGGGAAGGTTGAAGTTCGTAGTTCTGTAAGCATTTTGGCTTCTTTTGTGTGTATTCTTTGTAGTCTGTAGCTTGTAATGTTTCAATTGAATGTAT

Basic information

species Glycine max
transcript GLYMA0041S00260.3
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208194438|gb|GD992523.1|GD992523
EST:     TTCCCTGCCACTGTTCCAGCTTATTACAGAACTCCTCCAGTTGCACAATA                         AATTGAGGGAAGGTTGAAGTTCGTAGTTCTGTAAGCATTTTGGCTTCTTTT
genomic: TTCCCTGCCACTGTTCCAGCTTATTACAGAACTCCTCCAGTTGCACAATAgtgagtatca ... cttttttcagAATTGAGGGAAGGTTGAAGTTCGTAGTTCTGTAAGCATTTTGGCTTCTTTT
EST: gi|31305155|gb|CD390358.1|CD390358
EST:     TTCCCTGCCACTGTTCCAGCTTATTACAGAACTCCTCCAGTTGCACAATA                         AATTGAGGGAAG-TTGAAGTTCGTAGTTCTGTCAAGCATTTTGGCTTCTTT
genomic: TTCCCTGCCACTGTTCCAGCTTATTACAGAACTCCTCCAGTTGCACAATAgtgagtatca ... cttttttcagAATTGAGGGAAGGTTGAAGTTCGTAGTTCTGT-AAGCATTTTGGCTTCTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaaaaatcaaggtgctctcaatagcacgagctaactttatcctgcttttttcagAATTGAGGGAAGGTTGAAGTTCGTAGTTCTGTAAGCATTTTGGCTTCTTTTGTGTGTATTCTTTGTAGTCTGTAGCTTGTAATGTTTCAATTGAATGTAT
                             agctaac  putative branch site (score: 2)
                                   ctttatcctgcttttt  CT-rich tract
                                taactttat  TA-rich tract