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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttttattctatggttcctttaaattaggcatagaatagaagattgatgttttgtttacaagtgatcaatgatgaagcagGTGATTTTGGACTTGCCAAAATGTTGACTTCGGATGATCTTGCTTCCTCT

Basic information

species Glycine max
transcript GLYMA20G36690.2
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193553278|gb|FK509957.1|FK509957
EST:     TGTTCAAATATCTTCCTAACAAAAGATCATGACATACGTCTCG                         GTGATTTTGGACTTGCCAAAATGTTGACTTCGGATGATCTTGCTTCCTCT
genomic: TGTTCAAATATCTTCCTAACAAAAGATCATGACATACGTCTCGgtaagtttta ... gatgaagcagGTGATTTTGGACTTGCCAAAATGTTGACTTCGGATGATCTTGCTTCCTCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taggcatagaatagaagattgatgttttgtttacaagtgatcaatgatgaagcagGTGATTTTGGACTTGCCAAAATGTTGACTTCGGATGATCTTGCTTCCTCT
                gattgat  putative branch site (score: 4)
                        ttttgttta  TA-rich tract