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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttataaactttatttgctttaaaaatagaaggaaagcatcttcatttttttaatgaggaaaaaatgctataaaaggtctttgttcattttgcagGCTTATTTCAGTGAAATCGACCACACATTGAACAAATTAACCACA

Basic information

species Glycine max
transcript GLYMA10G32350.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23057324|gb|BU577998.1|BU577998
EST:     CAGTTCGTTTAGAAGAAAATGATGTGGAAGAGCTTGAAATGTTACTCGAG                         GCTTATTTCAGTGAAATCGACCACACATTGAACAAATTAACCACA
genomic: CAGTTCGTTTAGAAGAAAATGATGTGGAAGAGCTTGAAATGTTACTCGAGgttataaact ... cattttgcagGCTTATTTCAGTGAAATCGACCACACATTGAACAAATTAACCACA
EST: gi|6912766|gb|AW394354.1|AW394354
EST:     CAGTTCGTTTAGAAGAAAATGATGTGGAAGAGCTTGAAATGTTACTCGAG                         GCTTATTTCAGTGAAATCGACCACACATTGAACAAATTAACCACACTG
genomic: CAGTTCGTTTAGAAGAAAATGATGTGGAAGAGCTTGAAATGTTACTCGAGgttataaact ... cattttgcagGCTTATTTCAGTGAAATCGACCACACATTGAACAAATTAACCACACTG
EST: gi|51336479|gb|CO980345.1|CO980345
EST:     CAGTTCGTTTAGAAGAAAATGATGTGGAAGAGCTTGAAATGTTACTCGAG                         GCTTATTTCAGTGAAATCGACCACACATTGAACAAATTAACCACA
genomic: CAGTTCGTTTAGAAGAAAATGATGTGGAAGAGCTTGAAATGTTACTCGAGgttataaact ... cattttgcagGCTTATTTCAGTGAAATCGACCACACATTGAACAAATTAACCACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttcatttttttaatgaggaaaaaatgctataaaaggtctttgttcattttgcagGCTTATTTCAGTGAAATCGACCACACATTGAACAAATTAACCACA
        ttttaat  putative branch site (score: 3)
                                     tctttgttcatttt  putative PPT
     tttttttaatgaggaa  TA-rich tract