1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttcatttggttagagctttttctgatatttttttgttccttataatattgaataactgatactaagttgcatttacttgcattattgttaatggatatagGACAGGGATCGAAAATTAAGGATCTTTCCTGGCAGTGAGCACCCTTTTGTTGATCGCCCACTTGAACCGTATGTGATGCCTCCTAGAAGCGTACGGGAAA
species | Glycine max |
transcript | GLYMA19G36450.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCATTCGCAAAGCTGTTCTGCGTATGCTGCCTAGAAACAAACTACGTGAT GACAGGGATCGAAAATTAAGGATCTTTCCTGGCAGTGAGCACCCTTTTGTTEST: gi|57575446|gb|CX548421.1|CX548421
genomic: TCATTCGCAAAGCTGTTCTGCGTATGCTGCCTAGAAACAAACTACGTGATgtaagtacta ... atggatatagGACAGGGATCGAAAATTAAGGATCTTTCCTGGCAGTGAGCACCCTTTTGTT
EST: TCATTCGCAAAGCTGTTCTGCGTATGCTGCCTAGAAACAAACTACGTGAT GACAGGGATCGAAAATTAAGGATCTTTCCTGGCAGTGAGCACCCTTTTGTTEST: gi|31458202|gb|CD400230.1|CD400230
genomic: TCATTCGCAAAGCTGTTCTGCGTATGCTGCCTAGAAACAAACTACGTGATgtaagtacta ... atggatatagGACAGGGATCGAAAATTAAGGATCTTTCCTGGCAGTGAGCACCCTTTTGTT
EST: TCATTCGCAAAGCTGTTCTGCGTATGCTGCCTAGAAACAAACTACGTGAT GACAGGGATCGAAAATTAAGGATCTTTCCTGGCAGTGAGCACCCTTTTGTTEST: gi|192333033|gb|FK024682.1|FK024682
genomic: TCATTCGCAAAGCTGTTCTGCGTATGCTGCCTAGAAACAAACTACGTGATgtaagtacta ... atggatatagGACAGGGATCGAAAATTAAGGATCTTTCCTGGCAGTGAGCACCCTTTTGTT
EST: TCATTCGCAAAGCTGTTCTGCGTATGCTGCCTAGAAACAAACTACGTGAT GACAGGGATCGAAAATTAAGGATCTTTCCTGGCAGTGAGCACCCTTTTGTTEST: gi|11411884|gb|BF423895.1|BF423895
genomic: TCATTCGCAAAGCTGTTCTGCGTATGCTGCCTAGAAACAAACTACGTGATgtaagtacta ... atggatatagGACAGGGATCGAAAATTAAGGATCTTTCCTGGCAGTGAGCACCCTTTTGTT
EST: TCATTCGCAAAGCTGTTCTGCGTATGCTGCCTAGAAACAAACTACGTGAT GACAGGGATCGAAAATTAAGGATCTTTCCTGGCAGTGAGCACCCTTTTGTTEST: gi|151406922|gb|EV276737.1|EV276737
genomic: TCATTCGCAAAGCTGTTCTGCGTATGCTGCCTAGAAACAAACTACGTGATgtaagtacta ... atggatatagGACAGGGATCGAAAATTAAGGATCTTTCCTGGCAGTGAGCACCCTTTTGTT
EST: TCATTCGCAAAGCTGTTCTGCGTATGCTGCCTAGAAACAAACTACGTGAT GACAGGGATCGAAAATTAAGGATCTTTCCTGGCAGTGAGCACCCTTTTGTTEST: gi|9900944|gb|BE609912.1|BE609912
genomic: TCATTCGCAAAGCTGTTCTGCGTATGCTGCCTAGAAACAAACTACGTGATgtaagtacta ... atggatatagGACAGGGATCGAAAATTAAGGATCTTTCCTGGCAGTGAGCACCCTTTTGTT
EST: AAGCTGTTCTGCGTATGCTGCCTAGAAACAAACTACGTGAT GACAGGGATCGAAAATTAAGGATCTTTCCTGGCAGTGAGCACCCTTTTGTTEST: gi|6725962|gb|AW310361.1|AW310361
genomic: AAGCTGTTCTGCGTATGCTGCCTAGAAACAAACTACGTGATgtaagtacta ... atggatatagGACAGGGATCGAAAATTAAGGATCTTTCCTGGCAGTGAGCACCCTTTTGTT
EST: TCATTCGCAAAGCTGTTCTGCGTATGCTGCCTAGAAACAAACTACGTGAT GACAGGGATCGAAAATTAAGGATCTTTCCTGGCAGTGAGCACCCTTTTGTTEST: gi|192300730|gb|FG991112.1|FG991112
genomic: TCATTCGCAAAGCTGTTCTGCGTATGCTGCCTAGAAACAAACTACGTGATgtaagtacta ... atggatatagGACAGGGATCGAAAATTAAGGATCTTTCCTGGCAGTGAGCACCCTTTTGTT
EST: TCATTCGCAAAGCTGTTCTGCGTATGCTGCCTAGAAACAAACTACGTGAT GACAGGGATCGAAAATTAAGGATCTTTCCTGGCAGTGAGCACCCTTTTTGT
genomic: TCATTCGCAAAGCTGTTCTGCGTATGCTGCCTAGAAACAAACTACGTGATgtaagtacta ... atggatatagGACAGGGATCGAAAATTAAGGATCTTTCCTGGCAGTGAGCACCCTTTT-GT
tattgaataactgatactaagttgcatttacttgcattattgttaatggatatagGACAGGGATCGAAAATTAAGGATCTTTCCTGGCAGTGAGCACCCTTTTGTTGATCGCCCACTTGAACCGTATGTGATGCCTCCTAGAAGCGTACGGGAAA
attattgttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcatttggttagagctttttctgatatttttttgttccttataatattgaataactgatactaagttgcatttacttgcattattgttaatggatatagGACAGGGATCGAAAATTAAGGATCTTTCCTGGCAGTGAGCACCCTTTTGTTGATCGCCCACTTGAACCGTATGTGATGCCTCCTAGAAGCGTACGGGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - gttcctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgatac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agttgca