1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...cctatagtgatgacattcctatctcatgcttgctttggcagtgtcaaattgccaatatacatgttagatgccaaagaccattatatctctgatattgcagATGGCACGCTAGACCCTACTAAAGCATACAGCTCTGAGGAGTATCTTAAGATTACAGAGGAGCAGCTGAAGGCATCTGCTGCACAACAGCAGGGGCAAAC
species | Glycine max |
transcript | GLYMA20G30120.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACTTCATCATCCACTGTTGACCCCA ATGGCACGCTAGACCCTACTAAAGCATACAGCTCTGAGGAGTATCTTAAGAEST: gi|192311913|gb|FK004222.1|FK004222
genomic: ACTTCATCATCCACTGTTGACCCCAgtgagtaatc ... gatattgcagATGGCACGCTAGACCCTACTAAAGCATACAGCTCTGAGGAGTATCTTAAGA
EST: TTCCAATGTACGTAATACCACACCAACTTCATCATCCACTGTTGACCCCA ATGGCACGCTAGACCCTACTAAAGCATACAGCTCTGAGGAGTATCTTAAGAEST: gi|15204816|gb|BI427584.1|BI427584
genomic: TTCCAATGTACGTAATACCACACCAACTTCATCATCCACTGTTGACCCCAgtgagtaatc ... gatattgcagATGGCACGCTAGACCCTACTAAAGCATACAGCTCTGAGGAGTATCTTAAGA
EST: TTCCAATGTACGTAATACCACACCAACTTCATCATCCACTGTTGACCCCA ATGGCACGCTAGACCCTACTAAAGCATACAGCTCTGAGGAGTATCTTAAGAEST: gi|151402645|gb|EV272458.1|EV272458
genomic: TTCCAATGTACGTAATACCACACCAACTTCATCATCCACTGTTGACCCCAgtgagtaatc ... gatattgcagATGGCACGCTAGACCCTACTAAAGCATACAGCTCTGAGGAGTATCTTAAGA
EST: TTCCAATGTACGTAATACCACACCAACTTCATCATCCACTGTTGACCCCA ATGGCACGCTAGACCCTACTAAAGCATACAGCTCTGAGGAGTATCTTAAGAEST: gi|192334065|gb|FK026222.1|FK026222
genomic: TTCCAATGTACGTAATACCACACCAACTTCATCATCCACTGTTGACCCCAgtgagtaatc ... gatattgcagATGGCACGCTAGACCCTACTAAAGCATACAGCTCTGAGGAGTATCTTAAGA
EST: TTCCAATGTACGTAATACCACACCAACTTCATCATCCACTGTTGACCC-A ATGGCACGCTAGACCCTACTAAAGCATACAGCTCTGAGGAGTATCTTAAGAEST: gi|19348858|gb|BM893390.1|BM893390
genomic: TTCCAATGTACGTAATACCACACCAACTTCATCATCCACTGTTGACCCCAgtgagtaatc ... gatattgcagATGGCACGCTAGACCCTACTAAAGCATACAGCTCTGAGGAGTATCTTAAGA
EST: TTCCAATGTACGTAATACCACACCAACTTCATCATCCACTGTTGACCCCA ATGGCACGCTAGACCCTACTAAAGCATACAGCTCTGANGAGTATCTTAAGAEST: gi|192311912|gb|FK004221.1|FK004221
genomic: TTCCAATGTACGTAATACCACACCAACTTCATCATCCACTGTTGACCCCAgtgagtaatc ... gatattgcagATGGCACGCTAGACCCTACTAAAGCATACAGCTCTGAGGAGTATCTTAAGA
EST: TTCCAATGTACGTAATACCACACCAACTTCATCATCCACTGTTGACCCCA ATGGCACGCTAGACCCTACTAAAGCATACAGCTCTGAGGAGTATCTTAAGAEST: gi|192334066|gb|FK026223.1|FK026223
genomic: TTCCAATGTACGTAATACCACACCAACTTCATCATCCACTGTTGACCCCAgtgagtaatc ... gatattgcagATGGCACGCTAGACCCTACTAAAGCATACAGCTCTGAGGAGTATCTTAAGA
EST: TTCCAATGTACGTAATACCACACCAACTTCATCATCCACTGTTGA-CCCA ATGGCACGCTAGACCCTACTAAAGCATACAGCTTTGAGGAGTATCTTAAGAEST: gi|298179287|gb|HO027758.1|HO027758
genomic: TTCCAATGTACGTAATACCACACCAACTTCATCATCCACTGTTGACCCCAgtgagtaatc ... gatattgcagATGGCACGCTAGACCCTACTAAAGCATACAGCTCTGAGGAGTATCTTAAGA
EST: TTCCAATGTACGTAAAACCACACCAACTTCATCATCCACTGTTGACCCCA ATGGCACGCTAGACCCTACTAAAGCATACAGCTCTGAGGAGTATCTTAAGA
genomic: TTCCAATGTACGTAATACCACACCAACTTCATCATCCACTGTTGACCCCAgtgagtaatc ... gatattgcagATGGCACGCTAGACCCTACTAAAGCATACAGCTCTGAGGAGTATCTTAAGA
aaattgccaatatacatgttagatgccaaagaccattatatctctgatattgcagATGGCACGCTAGACCCTACTAAAGCATACAGCTCTGAGGAGTATCTTAAGATTACAGAGGAGCAGCTGAAGGCATCTGCTGCACAACAGCAGGGGCAAAC
ctctgat putative branch site (score: 4)
aatatacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cctatagtgatgacattcctatctcatgcttgctttggcagtgtcaaattgccaatatacatgttagatgccaaagaccattatatctctgatattgcagATGGCACGCTAGACCCTACTAAAGCATACAGCTCTGAGGAGTATCTTAAGATTACAGAGGAGCAGCTGAAGGCATCTGCTGCACAACAGCAGGGGCAAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - -agtgatg
- - - - - - -cattcct
- - - - - - - - - - - -tcatgct
- - - - - - - - - - - - - - - -gctttgg
- - - - - - - - - - - - - - - - - - - cagtgtc
- - - - - - - - - - - - - - - - - - - - - - - - -tgccaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tacatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatgcca