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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagattgtcctgcacaattattaaaagtcaatttatgtccttgtatggattttgtgtctaatgtttgcttgatttttagTGTAACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAG

Basic information

species Glycine max
transcript GLYMA12G08670.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|11687696|gb|BF595372.1|BF595372
EST:     GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAG                         TGTAACTGCTCAAGA
genomic: GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAGgtaagattgt ... tgatttttagTGTAACTGCTCAAGA
EST: gi|23063991|gb|BU578764.1|BU578764
EST:     GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAG                         TGTAACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAG
genomic: GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAGgtaagattgt ... tgatttttagTGTAACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAG
EST: gi|151399558|gb|EV269429.1|EV269429
EST:     GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAACCAAATTTTTGGAAG                         TGTAACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAG
genomic: GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAGgtaagattgt ... tgatttttagTGTAACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAG
EST: gi|19452866|gb|BM954276.1|BM954276
EST:     GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAG                         TGTAACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAG
genomic: GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAGgtaagattgt ... tgatttttagTGTAACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAG
EST: gi|7796407|gb|AW781804.1|AW781804
EST:     GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAG                         TGTAACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAA
genomic: GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAGgtaagattgt ... tgatttttagTGTAACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAA
EST: gi|207746745|gb|GD719296.1|GD719296
EST:     GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAG                         TGTAACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAG
genomic: GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAGgtaagattgt ... tgatttttagTGTAACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagtcaatttatgtccttgtatggattttgtgtctaatgtttgcttgatttttagTGTAACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAG
                                       tttgctt  CT-rich tract
                                            ttgattttta  TA-rich tract