1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaatactagtgaaattgagacaagttttcaccatttattcattctcactcaaacatttgcttatgtatgtaatcaaaaatcaatattgtgtagGTGACAGCAGATTTAACACCTTTAAATCCAAGGAAAGTAGCTGTAAAATTTGATACTTTCAAAATTGGAGGCATT
species | Glycine max |
transcript | GLYMA08G19810.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCGATACTCTAAGGGCCCAAAATATTGAATCTTGGCCATTCTTCAACCAG GTGACAGCAGATTTAACACCTTTTAATCCCAAG-AAAGTAGCTGTAAAATTEST: gi|7691813|gb|AW759933.1|AW759933
genomic: TCGATACTCTAAGGGCCCAAAATATGGAATCTTGGCCATTCTTCAACCAGgtaatactag ... tattgtgtagGTGACAGCAGATTTAACACCTTTAAATCC-AAGGAAAGTAGCTGTAAAATT
EST: TCGATACTCTAAGGGCCCAAAATATGGAATCTTGACCATTCTTCAACCAG GTGACAGCAGATGTAACACCTGTGAATCCAAGGAAAGTAGCTGTAAAAEST: gi|10233924|gb|BE802812.1|BE802812
genomic: TCGATACTCTAAGGGCCCAAAATATGGAATCTTGGCCATTCTTCAACCAGgtaatactag ... tattgtgtagGTGACAGCAGATTTAACACCTTTAAATCCAAGGAAAGTAGCTGTAAAA
EST: TCGATACTCTAAGGGCCCAAAATATGGAATCTTGGCCATTCTTCAACCAC GTGACAGCAGATNTAACACCTTTAAATCCAAGGAAAGTAGCTGTAAAATTTEST: gi|20449275|gb|BQ253399.1|BQ253399
genomic: TCGATACTCTAAGGGCCCAAAATATGGAATCTTGGCCATTCTTCAACCAGgtaatactag ... tattgtgtagGTGACAGCAGATTTAACACCTTTAAATCCAAGGAAAGTAGCTGTAAAATTT
EST: TCGATACTCTAAGGGCCCAAAATATGGAATCTTGGCCATTCTTCAACCAG GTGACAGCAGATTTAACACCTTTAAATCCAAGGAAAGTAGCTGTAAAATTTEST: gi|192298088|gb|FG991368.1|FG991368
genomic: TCGATACTCTAAGGGCCCAAAATATGGAATCTTGGCCATTCTTCAACCAGgtaatactag ... tattgtgtagGTGACAGCAGATTTAACACCTTTAAATCCAAGGAAAGTAGCTGTAAAATTT
EST: TCGATACTCTAAGGGCCCAAAATATGGAATCTTGGCCATTCTTCAACCAG GTGACAGCAGATTTAACACCTTTAAATCCAAGGAAAGTAGCTGTAAAATTTEST: gi|21889067|gb|BQ742280.1|BQ742280
genomic: TCGATACTCTAAGGGCCCAAAATATGGAATCTTGGCCATTCTTCAACCAGgtaatactag ... tattgtgtagGTGACAGCAGATTTAACACCTTTAAATCCAAGGAAAGTAGCTGTAAAATTT
EST: TCGATACTCTAAGGGCCCAAAATATGGAATCTTGGCCATTCTTCAACCAG GTGACAGCAGATTTAACACCTTTAAATCCAAGGAAAGTAGCTGTAAAATTTEST: gi|17023832|gb|BM094866.1|BM094866
genomic: TCGATACTCTAAGGGCCCAAAATATGGAATCTTGGCCATTCTTCAACCAGgtaatactag ... tattgtgtagGTGACAGCAGATTTAACACCTTTAAATCCAAGGAAAGTAGCTGTAAAATTT
EST: TCGATACTCTAAGGGCCCAAAATATGGAATCTTGGCCATTCTTCAACCAG GTGACAGCAGATTTAACACCTTTAAATCCAAGGAAAGTAGCTGTAAAATTTEST: gi|16348015|gb|BI973610.1|BI973610
genomic: TCGATACTCTAAGGGCCCAAAATATGGAATCTTGGCCATTCTTCAACCAGgtaatactag ... tattgtgtagGTGACAGCAGATTTAACACCTTTAAATCCAAGGAAAGTAGCTGTAAAATTT
EST: TCGATACTCTAAGGGCCCAAAATATGGAATCTTGGNCATTCTTCAACCAG GTGACAGCAGATTTAACACCTTTAAATCCAAGGAAAGTAGCTGTAAAATTTEST: gi|7926228|gb|AW832254.1|AW832254
genomic: TCGATACTCTAAGGGCCCAAAATATGGAATCTTGGCCATTCTTCAACCAGgtaatactag ... tattgtgtagGTGACAGCAGATTTAACACCTTTAAATCCAAGGAAAGTAGCTGTAAAATTT
EST: TCGATACTCTAAGGGCCCANAATATGGAATCTTGGCCATTCTTCAACCAG GTGACAGCAGATTTAACACCTTTTAATCCAAAGAAAGTAGCTGTAAAATTTEST: gi|151393651|gb|EV263526.1|EV263526
genomic: TCGATACTCTAAGGGCCCAAAATATGGAATCTTGGCCATTCTTCAACCAGgtaatactag ... tattgtgtagGTGACAGCAGATTTAACACCTTTAAATCCAAGGAAAGTAGCTGTAAAATTT
EST: TCGATACTCTAAGGGCCCAAAATATGGAATCTTGGCCATTCTTCAACCAG GTGACAGCAGATTTAACACCTTTAAATCCAAGGAAAGTAGCTGTAAAATTTEST: gi|26057243|gb|CA800157.1|CA800157
genomic: TCGATACTCTAAGGGCCCAAAATATGGAATCTTGGCCATTCTTCAACCAGgtaatactag ... tattgtgtagGTGACAGCAGATTTAACACCTTTAAATCCAAGGAAAGTAGCTGTAAAATTT
EST: TCGATACTCTAAGGGCCCAAAATATGGAATCTTGGCCATTCTTCAACCAG GTGACAGCAGATTTAACACCTTTAAATCCAAGGAAAGTAGCTGTAAAATTT
genomic: TCGATACTCTAAGGGCCCAAAATATGGAATCTTGGCCATTCTTCAACCAGgtaatactag ... tattgtgtagGTGACAGCAGATTTAACACCTTTAAATCCAAGGAAAGTAGCTGTAAAATTT
tcattctcactcaaacatttgcttatgtatgtaatcaaaaatcaatattgtgtagGTGACAGCAGATTTAACACCTTTAAATCCAAGGAAAGTAGCTGTAAAATTTGATACTTTCAAAATTGGAGGCATT
ttctcac putative branch site (score: 2)
ttatgtatgtaatcaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatactagtgaaattgagacaagttttcaccatttattcattctcactcaaacatttgcttatgtatgtaatcaaaaatcaatattgtgtagGTGACAGCAGATTTAACACCTTTAAATCCAAGGAAAGTAGCTGTAAAATTTGATACTTTCAAAATTGGAGGCATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG