1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...acatcacccttattttttaaaattcttcttggtgtatttttttgtatgttcctttcatccgtatctggttaattttttcattgatgcattatgaaaacagGTTAAGTCATTGCTTGCTGATGCAAAGGCAGGAGCTCGTTTGAGTGCACTTGAGAACTCAACAAATACAAATGCTCTGTCAATCAACTCTCTACCTTCCT
species | Glycine max |
transcript | GLYMA20G35090.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTGAGGAGCTATTCACACAGTGGCTTTCGCTTCCAGATACTTGTCGCCTG GTTAAGTCATTGCTTGCTGATGCAAAGGCAGGAGCTCGTTTGAGTGCACTTEST: gi|26048229|gb|CA784770.1|CA784770
genomic: TTGAGGAGCTATTCACACAGTGGCTTTCGCTTCCAGATACTTGTCGCCTGgtacacacta ... atgaaaacagGTTAAGTCATTGCTTGCTGATGCAAAGGCAGGAGCTCGTTTGAGTGCACTT
EST: TTGAGGAGCTATTCACACAGTGGCTTTCGCTTCCAGATACTTGTCGCCTG GTTAAGTCATTGCTTGCTGATGCAAAGGCAGGAGCTCGTTTGAGTGCACTTEST: gi|208244422|gb|GE038463.1|GE038463
genomic: TTGAGGAGCTATTCACACAGTGGCTTTCGCTTCCAGATACTTGTCGCCTGgtacacacta ... atgaaaacagGTTAAGTCATTGCTTGCTGATGCAAAGGCAGGAGCTCGTTTGAGTGCACTT
EST: TTGAGGAGCTATTCACACAGTGGCTTTCGCTTCCAGATACTTGTCGCCTG GTTAAGTCATTGCTTGCTGATGCAAAGGCAGGAGCTCGTTTGAGTGCACTT
genomic: TTGAGGAGCTATTCACACAGTGGCTTTCGCTTCCAGATACTTGTCGCCTGgtacacacta ... atgaaaacagGTTAAGTCATTGCTTGCTGATGCAAAGGCAGGAGCTCGTTTGAGTGCACTT
atgttcctttcatccgtatctggttaattttttcattgatgcattatgaaaacagGTTAAGTCATTGCTTGCTGATGCAAAGGCAGGAGCTCGTTTGAGTGCACTTGAGAACTCAACAAATACAAATGCTCTGTCAATCAACTCTCTACCTTCCT
cattgat putative branch site (score: 4)
ttaattttttcattga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acatcacccttattttttaaaattcttcttggtgtatttttttgtatgttcctttcatccgtatctggttaattttttcattgatgcattatgaaaacagGTTAAGTCATTGCTTGCTGATGCAAAGGCAGGAGCTCGTTTGAGTGCACTTGAGAACTCAACAAATACAAATGCTCTGTCAATCAACTCTCTACCTTCCT
- - caccctt
- - - - - - - - - - - - - -cttggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatgca