1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ctatttctgattgtttctttatggttttcatcatatttcataacttttgattttgttttattacctggaaattgatgatacccttgaaactggatattagGTTAAATGGCGAGGATCAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGAAGAAGGGTCCTTCTCGGATAAGTGCCGTGACTGTTATATTTTACTTTTT
species | Glycine max |
transcript | GLYMA20G32530.5 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTCGATCCACTACGTGCCTGATCCTCTGCTTCAGGCACATACTCCCGCAG GTTAAATGGCGAGGATCAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGAEST: gi|192295767|gb|FG990847.1|FG990847
genomic: TTCGATCCACTACGTGCCTGATCCTCTGCTTCAGGCACATACTCCCGCAGgttctacctc ... tggatattagGTTAAATGGCGAGGATCAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGA
EST: TTCGATCCACTACGTGCCTGATCCTCTGCTTCAGGCACATACTCCCGCAG GTTAAATGGCGAGGATCAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGAEST: gi|151399368|gb|EV269239.1|EV269239
genomic: TTCGATCCACTACGTGCCTGATCCTCTGCTTCAGGCACATACTCCCGCAGgttctacctc ... tggatattagGTTAAATGGCGAGGATCAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGA
EST: TTCGATCCACTACGTGCCTGATCCTCTGCTTCAGGCACATACTCCCGCAG GTTAAATGGCGAGGATCAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGAEST: gi|298189311|gb|HO037714.1|HO037714
genomic: TTCGATCCACTACGTGCCTGATCCTCTGCTTCAGGCACATACTCCCGCAGgttctacctc ... tggatattagGTTAAATGGCGAGGATCAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGA
EST: GATCCACTACGTGCCTGATCCTCTGCTTCAGGCACATACTCCCGCAG GTTAAATGGCGAGGATCAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGAEST: gi|192307320|gb|FK002384.1|FK002384
genomic: GATCCACTACGTGCCTGATCCTCTGCTTCAGGCACATACTCCCGCAGgttctacctc ... tggatattagGTTAAATGGCGAGGATCAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGA
EST: TTCGATCCACTACGTGCCTGATCCTCTGCTTCAGGCACATACTCCCGCAG GTTAAATGGCGAGGATCAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGAEST: gi|151402040|gb|EV271853.1|EV271853
genomic: TTCGATCCACTACGTGCCTGATCCTCTGCTTCAGGCACATACTCCCGCAGgttctacctc ... tggatattagGTTAAATGGCGAGGATCAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGA
EST: TTCGATCCACTACGTGCCTGATCCTCTGCTTCAGGCACATACTCCCGCAG GTTAAATGGCGAGGATCAAACCTCAGGCTCTGCCACAGCAAAGCAAAAGGAEST: gi|208080337|gb|GD877141.1|GD877141
genomic: TTCGATCCACTACGTGCCTGATCCTCTGCTTCAGGCACATACTCCCGCAGgttctacctc ... tggatattagGTTAAATGGCGAGGATCAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGA
EST: TTCGATCCACTACGTGCCTGATCCTCTGCTTCAGGCACATACTCCCGCAG GTTAAATGGCGAGGACCAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGAEST: gi|298192825|gb|HO033259.1|HO033259
genomic: TTCGATCCACTACGTGCCTGATCCTCTGCTTCAGGCACATACTCCCGCAGgttctacctc ... tggatattagGTTAAATGGCGAGGATCAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGA
EST: CCTCTGCTTCAGGCACATACTCCCGCAG GTTAAATGGCGAGGATCAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGAEST: gi|10231625|gb|BE800513.1|BE800513
genomic: CCTCTGCTTCAGGCACATACTCCCGCAGgttctacctc ... tggatattagGTTAAATGGCGAGGATCAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGA
EST: TTCGATCCACTACGTGCCTGATCCTCTGCTTCAGGCACATACTCCCGCAG GTTAAATGGCGAGGATCAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGAEST: gi|298167095|gb|HO010534.1|HO010534
genomic: TTCGATCCACTACGTGCCTGATCCTCTGCTTCAGGCACATACTCCCGCAGgttctacctc ... tggatattagGTTAAATGGCGAGGATCAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGA
EST: TTCGATCCACTACGTGCCTGATCCTCTGCTTCAGGCACATACTCCCGCAG GTTAAATGGCGAGGATCAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGAEST: gi|192323408|gb|FK018999.1|FK018999
genomic: TTCGATCCACTACGTGCCTGATCCTCTGCTTCAGGCACATACTCCCGCAGgttctacctc ... tggatattagGTTAAATGGCGAGGATCAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGA
EST: TTCGATCCACTACGTGCCTGATCCTCTGCTTCAGGCACATACTCCCGCAG GTTAAATGGCGAGGATCAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGAEST: gi|192313756|gb|FK007320.1|FK007320
genomic: TTCGATCCACTACGTGCCTGATCCTCTGCTTCAGGCACATACTCCCGCAGgttctacctc ... tggatattagGTTAAATGGCGAGGATCAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGA
EST: TTCGATCCACTACGTGCCTGATCCTCTGCTTCAGGCACATACTCCCGCAG GTTAAATGGCGAGGATCAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGAEST: gi|17023121|gb|BM094155.1|BM094155
genomic: TTCGATCCACTACGTGCCTGATCCTCTGCTTCAGGCACATACTCCCGCAGgttctacctc ... tggatattagGTTAAATGGCGAGGATCAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGA
EST: TTCGATCCACTACGTGCCTGATCCTCTGCTTCAGGCACATACTCCCGCAG GTTAAATGGCGAGGATCAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGAEST: gi|208174493|gb|GD971730.1|GD971730
genomic: TTCGATCCACTACGTGCCTGATCCTCTGCTTCAGGCACATACTCCCGCAGgttctacctc ... tggatattagGTTAAATGGCGAGGATCAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGA
EST: TTCGATCCACTACGTGCCTGATCCTCTGCTTCAGGCACATACTCCCGCAG GTTAAATGGCGAGGATCAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGAEST: gi|192313755|gb|FK007319.1|FK007319
genomic: TTCGATCCACTACGTGCCTGATCCTCTGCTTCAGGCACATACTCCCGCAGgttctacctc ... tggatattagGTTAAATGGCGAGGATCAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGA
EST: TTCGATCCACTACGTGCCTGATCCTCTGCTTCAGGCACATACTCCCGCAG GTTAAATGGCGAGGATCAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGAEST: gi|26058176|gb|CA801090.1|CA801090
genomic: TTCGATCCACTACGTGCCTGATCCTCTGCTTCAGGCACATACTCCCGCAGgttctacctc ... tggatattagGTTAAATGGCGAGGATCAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGA
EST: TTCGATCCACTACGTGCCTGATCCTCTGCTTCAGGCACATACTCCCGCAG GTTAAATGGCGAGGATCAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGA
genomic: TTCGATCCACTACGTGCCTGATCCTCTGCTTCAGGCACATACTCCCGCAGgttctacctc ... tggatattagGTTAAATGGCGAGGATCAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGA
tttgattttgttttattacctggaaattgatgatacccttgaaactggatattagGTTAAATGGCGAGGATCAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGAAGAAGGGTCCTTCTCGGATAAGTGCCGTGACTGTTATATTTTACTTTTT
aattgat putative branch site (score: 4)
ttttgttttatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctatttctgattgtttctttatggttttcatcatatttcataacttttgattttgttttattacctggaaattgatgatacccttgaaactggatattagGTTAAATGGCGAGGATCAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGAAGAAGGGTCCTTCTCGGATAAGTGCCGTGACTGTTATATTTTACTTTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG