1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gacttgagagaattttctctgtttgataattgcgcagttatgcttatccatgttacacagggtgacttcgagtattgagtatttcttaacttgtgttcagGGAAAATGAGGCCTATTTTCTGTGGAAATTTTGAATATGATGCCCGGCAGTCAGAGCTGGAGCGGCTTTTTAGACGATATGGGAAGGTTGATAGGGTGGA
species | Glycine max |
transcript | GLYMA20G29460.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCTTAGGGTTCCAACTTCCAACCCAACACTTATCGTTCTCATGCAACAAG GGAAAATGAGGCCTATTTTCTGTGGAAATTTTGAATATGATGCCCGGCAGTEST: gi|209705492|gb|BW668070.1|BW668070
genomic: GCTTAGGGTTCCAACTTCCAACCCAACACTTATCGTTCTCATGCAACAAGgtgatccatc ... ttgtgttcagGGAAAATGAGGCCTATTTTCTGTGGAAATTTTGAATATGATGCCCGGCAGT
EST: GCTTAGGGTTCCAACTTCCAACCCAACACTTATCGTTCTCATGCAACAAG GGAAAATGAGGCCTATTTTCTGTGGAAATTTTGAATATGATGCCCGGCAGTEST: gi|298175607|gb|HO015126.1|HO015126
genomic: GCTTAGGGTTCCAACTTCCAACCCAACACTTATCGTTCTCATGCAACAAGgtgatccatc ... ttgtgttcagGGAAAATGAGGCCTATTTTCTGTGGAAATTTTGAATATGATGCCCGGCAGT
EST: GCTTAGGGTTCCAACTTCCAACCCAACGCTTATCGTTCTCATGCAACAAG GGAAAATGAGGCCTATTTTCTGTGGAAATTTTGAATATGATGCCCGGCAGTEST: gi|9986286|gb|BE660394.1|BE660394
genomic: GCTTAGGGTTCCAACTTCCAACCCAACACTTATCGTTCTCATGCAACAAGgtgatccatc ... ttgtgttcagGGAAAATGAGGCCTATTTTCTGTGGAAATTTTGAATATGATGCCCGGCAGT
EST: GCTTAGGGTTCCAACTTCCAACCCAACACTTATCGTTCTCATGCAACAAG GGAAAATGAGGCCTATTTTCTGTGGAAATTTTGAATATGATGCCCGGCAGTEST: gi|7796093|gb|AW781490.1|AW781490
genomic: GCTTAGGGTTCCAACTTCCAACCCAACACTTATCGTTCTCATGCAACAAGgtgatccatc ... ttgtgttcagGGAAAATGAGGCCTATTTTCTGTGGAAATTTTGAATATGATGCCCGGCAGT
EST: GCTTAGGGTTCCAACTTCCAACCCAACACTTATCGTTCTCATGCAACAAG GGAAAATGAGGCCTATTTTCTGTGGAAATTTTGAATATGATGCCCGGCAGT
genomic: GCTTAGGGTTCCAACTTCCAACCCAACACTTATCGTTCTCATGCAACAAGgtgatccatc ... ttgtgttcagGGAAAATGAGGCCTATTTTCTGTGGAAATTTTGAATATGATGCCCGGCAGT
atccatgttacacagggtgacttcgagtattgagtatttcttaacttgtgttcagGGAAAATGAGGCCTATTTTCTGTGGAAATTTTGAATATGATGCCCGGCAGTCAGAGCTGGAGCGGCTTTTTAGACGATATGGGAAGGTTGATAGGGTGGA
tcttaac putative branch site (score: 2)
tatttcttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gacttgagagaattttctctgtttgataattgcgcagttatgcttatccatgttacacagggtgacttcgagtattgagtatttcttaacttgtgttcagGGAAAATGAGGCCTATTTTCTGTGGAAATTTTGAATATGATGCCCGGCAGTCAGAGCTGGAGCGGCTTTTTAGACGATATGGGAAGGTTGATAGGGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - ctgtttg
- - - - - - - - - - - - - - - - - - gttatgc
- - - - - - - - - - - - - - - - - - - - - - - -ccatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgactt