1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
cgtgagaccctttttcctcctttcttactctatccactctaagtaatattctcacattctgttcttaatatgtacactactttagtgaatatactagtagcttcattttctaacaattttattttcatggatgtgttgtttttgcaGGTGATTAGAACATTTTTTGCAATCCTTTTGGTTGCACTGCTGAGTTCAGAGAGAGTAGAGAGCAGAAAAGCCAAAGTTGTGACCACTTCCTTGGAGTAC
species | Glycine max |
transcript | GLYMA18G47130.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTTCTTTTTCTTATAATGGGGCTCTTGTGGAAAACTCACACGAGGATACA CGTGATTAGAACATTTTTTGCAATCCTTTTGGTTGCACTGCTGAGTTCAGAEST: gi|213619561|gb|DB963727.1|DB963727
genomic: GTTCTTTTTCTTATAATGGGGCTCTTGTGGAAAACTCACACGAGGATACAcgtgagaccc ... tgtttttgcaGGTGATTAGAACATTTTTTGCAATCCTTTTGGTTGCACTGCTGAGTTCAGA
EST: GTTCTTTTTCTTATAATGGGGCTCTTGTGGAAAACTCACACGAGGATACA CGTGATTAAAACATTTTTTGCAATCCTTTTGGTTGCACTGCTGAGTTCAGAEST: gi|18712560|gb|BM522664.1|BM522664
genomic: GTTCTTTTTCTTATAATGGGGCTCTTGTGGAAAACTCACACGAGGATACAcgtgagaccc ... tgtttttgcaGGTGATTAGAACATTTTTTGCAATCCTTTTGGTTGCACTGCTGAGTTCAGA
EST: GTTCTTTTTCTTATAATGGGGCTCTTGTGGAAAACTCACACGAGGATACA CGTGATTAGAACATTTTTTGCAATCCTTTTGGTTGCACTGCTGAGTTCAGA
genomic: GTTCTTTTTCTTATAATGGGGCTCTTGTGGAAAACTCACACGAGGATACAcgtgagaccc ... tgtttttgcaGGTGATTAGAACATTTTTTGCAATCCTTTTGGTTGCACTGCTGAGTTCAGA
tactagtagcttcattttctaacaattttattttcatggatgtgttgtttttgcaGGTGATTAGAACATTTTTTGCAATCCTTTTGGTTGCACTGCTGAGTTCAGAGAGAGTAGAGAGCAGAAAAGCCAAAGTTGTGACCACTTCCTTGGAGTAC
ttctaac putative branch site (score: 1)
ttgttttt putative PPT
ttcattttctaacaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgtgagaccctttttcctcctttcttactctatccactctaagtaatattctcacattctgttcttaatatgtacactactttagtgaatatactagtagcttcattttctaacaattttattttcatggatgtgttgtttttgcaGGTGATTAGAACATTTTTTGCAATCCTTTTGGTTGCACTGCTGAGTTCAGAGAGAGTAGAGAGCAGAAAAGCCAAAGTTGTGACCACTTCCTTGGAGTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG