1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...cgtgtccctcgcacggcgctcatgcgcgtatccctgacacctgttcgtccccgcctcgcattaaccactatgttttacaacccccaatccacccctgcagCCGCGCCGTGAAGGAGGGCCTCCAGGGACAGGAGCTGGGCGACCAGGCCGTGTTCGGACAGCAGTAAGGAGTATGGCGACTGAACTGCTGCAGCAGCGTG
species | Chlamydomonas reinhardtii |
transcript | EDP09906 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GAGGACGAGACGCCCGGGTACGGCAAGGACACGCTGGAGGACTTCTTCAG CCGCGCTGTGAAGGAGGGCCTCCAGGGACAGGAGCTGGGCGACCAGGCCGTEST: gi|161803012|gb|FC090262.1|FC090262
genomic: GAGGACGAGACGCCCGGGTACGGCAAGGACACGCTGGAGGACTTCTTCAGgtgtgtggcg ... acccctgcagCCGCGCCGTGAAGGAGGGCCTCCAGGGACAGGAGCTGGGCGACCAGGCCGT
EST: GAGGACGAGACGCCCGGGTACGGCAAGGACACGCTGGAGGACTTCTTCAG CCGCGCTGTGAAGGAGGGCCTCCAGGGACAGGAGCTGGGCGACCAGGCCGTEST: gi|161822194|gb|FC110840.1|FC110840
genomic: GAGGACGAGACGCCCGGGTACGGCAAGGACACGCTGGAGGACTTCTTCAGgtgtgtggcg ... acccctgcagCCGCGCCGTGAAGGAGGGCCTCCAGGGACAGGAGCTGGGCGACCAGGCCGT
EST: GAGGACGAGACGCCCGGGTACGGCAAGGACACGCTGGAGGACTTCTTCAG CCGCGCTGTGAAGGAGGGCCTCCAGGGACAGGAGCTGGGCGACCAGGCCGTEST: gi|15369830|gb|BI529256.1|BI529256
genomic: GAGGACGAGACGCCCGGGTACGGCAAGGACACGCTGGAGGACTTCTTCAGgtgtgtggcg ... acccctgcagCCGCGCCGTGAAGGAGGGCCTCCAGGGACAGGAGCTGGGCGACCAGGCCGT
EST: GAGGACGAGACGCCCGGGTACGGCAAGGACACGCTGGAGGACTTCTTCAG CCGCGCCGTGAAGGAGGGCCTCCAGGGACAGGAGCTGGGCGACCAGGCCGT
genomic: GAGGACGAGACGCCCGGGTACGGCAAGGACACGCTGGAGGACTTCTTCAGgtgtgtggcg ... acccctgcagCCGCGCCGTGAAGGAGGGCCTCCAGGGACAGGAGCTGGGCGACCAGGCCGT
cgtccccgcctcgcattaaccactatgttttacaacccccaatccacccctgcagCCGCGCCGTGAAGGAGGGCCTCCAGGGACAGGAGCTGGGCGACCAGGCCGTGTTCGGACAGCAGTAAGGAGTATGGCGACTGAACTGCTGCAGCAGCGTG
cattaac putative branch site (score: 2)
tccacccct putative PPT
tatgtttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgtgtccctcgcacggcgctcatgcgcgtatccctgacacctgttcgtccccgcctcgcattaaccactatgttttacaacccccaatccacccctgcagCCGCGCCGTGAAGGAGGGCCTCCAGGGACAGGAGCTGGGCGACCAGGCCGTGTTCGGACAGCAGTAAGGAGTATGGCGACTGAACTGCTGCAGCAGCGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - -ctcgcac
- - - - - - - - - - catgcgc
- - - - - - - - - - - - - - - - - - acacctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaccact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgtttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acaaccc