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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggcggtagtaagcagtacggctggtgcttggtttgcttgcatgagctgccgaacaaaacatctacgggtgtgagtaaggcaccggtagcatgtcgaggggagttgctgctcgtgcacgggtatccaaacgtgtgatcgcacgccgtctacagGCACCAAGGGTGCTGCTGCCGGTGGCGCGGGGGGCATCCTCCAGATGCTGTGCGCGTGCCTAGCGCCGCCCGCCGACCAGAACGGCCCCTCAGGCACTCC

Basic information

species Chlamydomonas reinhardtii
transcript EDP04316
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16073065|gb|BI875061.1|BI875061
EST:     CAGCGCCAAGATCCAGCAATTCATAGGCATGTACCAGGCGCTGACGGCAG                         GCACCAAGGGTGCTGCTGCCGGTGGCGCGGGGGGCATCCTCCAGATGCTGT
genomic: CAGCGCCAAGATCCAGCAATTCATAGGCATGTACCAGGCGCTGACGGCAGgtgggcggta ... ccgtctacagGCACCAAGGGTGCTGCTGCCGGTGGCGCGGGGGGCATCCTCCAGATGCTGT
EST: gi|14242129|gb|BG860945.1|BG860945
EST:     CAGCGCCAAGATCCAGCAATTCATAGGCATGTACCAGGCGCTGACGGCAG                         GCACCAAGGGTGCTGCTGCCGGTGGCGCGGNGGGCATCCTCCAGATGCTGT
genomic: CAGCGCCAAGATCCAGCAATTCATAGGCATGTACCAGGCGCTGACGGCAGgtgggcggta ... ccgtctacagGCACCAAGGGTGCTGCTGCCGGTGGCGCGGGGGGCATCCTCCAGATGCTGT
EST: gi|10127893|gb|BE726709.1|BE726709
EST:     CAGCGCCAAGATCCAGCAATTCATAGGCATGTACCANGCGCTGACGGCAG                         GCACCATAGG-TGCTG
genomic: CAGCGCCAAGATCCAGCAATTCATAGGCATGTACCAGGCGCTGACGGCAGgtgggcggta ... ccgtctacagGCACCA-AGGGTGCTG