1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ctgtggcaggttcctgccatcttaaacctttatgggcaagctccaagacgtcacgcactcatcaacacaccacacacgcacgcgcctgatccgctcgcagGCAGAAGTACGTGGAGGAGCAGCTGGCGGCGCGGCTGGGCAAGACGGCGGAGGCGGAGGCGGAGGAGAACGACCCCGAGGTCAAGCGGAGAAAG
species | Chlamydomonas reinhardtii |
transcript | EDP06364 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TACGTGAAGGCCAAGAGCATTGCGGTGCAGATGGACGAGGATGCACACAT GCAGAAGTACGTGGAGGAGCAGCTGGCGGCGCGGCTGGGCAAGACGGCGGAEST: gi|34991151|gb|CF565068.1|CF565068
genomic: TACGTGAAGGCCAAGAGCATTGCGGTGCAGATGGACGAGGATGCACACATgtgagtggtg ... ccgctcgcagGCAGAAGTACGTGGAGGAGCAGCTGGCGGCGCGGCTGGGCAAGACGGCGGA
EST: TACGTGAAGGCCAAGAGCATTGCGGTGCAGATGGACGAGGATGCACACAT GCAGAAGTACGTGGAGGAGCAGCTGGCGGCGCGGCTGGGCAAGACGGCGGAEST: gi|34991150|gb|CF565067.1|CF565067
genomic: TACGTGAAGGCCAAGAGCATTGCGGTGCAGATGGACGAGGATGCACACATgtgagtggtg ... ccgctcgcagGCAGAAGTACGTGGAGGAGCAGCTGGCGGCGCGGCTGGGCAAGACGGCGGA
EST: TACGTGAAGGCCAAGAGCATTGCGGTGCAGATGGACGAGGATGCACACAT GCAGAAGTACGTGGAGGAGCAGCTGGCGGCGCGGCTGGGCAAGACGGCGGAEST: gi|34980664|gb|CF554693.1|CF554693
genomic: TACGTGAAGGCCAAGAGCATTGCGGTGCAGATGGACGAGGATGCACACATgtgagtggtg ... ccgctcgcagGCAGAAGTACGTGGAGGAGCAGCTGGCGGCGCGGCTGGGCAAGACGGCGGA
EST: TACGTGAAGGCCAAGAGCATTGCGGTGCAGATGGACGAGGATGCACACAT GCAGAAGTACGTGGAGGAGCAGCTGGCGGCGCGGCTGGGCAAGACGGCGGAEST: gi|34980665|gb|CF554694.1|CF554694
genomic: TACGTGAAGGCCAAGAGCATTGCGGTGCAGATGGACGAGGATGCACACATgtgagtggtg ... ccgctcgcagGCAGAAGTACGTGGAGGAGCAGCTGGCGGCGCGGCTGGGCAAGACGGCGGA
EST: TACGTGAAGGCCAAGAGCATTGCGGTGCAGATGGACGAGGATGCACACAT GCAGAAGTACGTGGAGGAGCAGCTGGCGGCGCTGCTGGGCAAGACGGCGGAEST: gi|34993494|gb|CF567411.1|CF567411
genomic: TACGTGAAGGCCAAGAGCATTGCGGTGCAGATGGACGAGGATGCACACATgtgagtggtg ... ccgctcgcagGCAGAAGTACGTGGAGGAGCAGCTGGCGGCGCGGCTGGGCAAGACGGCGGA
EST: TACGTGAAGGCCAAGAGCATTGCGGTGCAGATGGACGAGGATGCACACAT GCAGAAGTACGTGGAGGAGCAGCTGGCGGCGCGGCTGGGCAAGACGGCGGAEST: gi|34988141|gb|CF562058.1|CF562058
genomic: TACGTGAAGGCCAAGAGCATTGCGGTGCAGATGGACGAGGATGCACACATgtgagtggtg ... ccgctcgcagGCAGAAGTACGTGGAGGAGCAGCTGGCGGCGCGGCTGGGCAAGACGGCGGA
EST: TACGTGAAGGCCAAGAGCATTGCGGTGCAGATGGACGAGGATGCACACAT GCAGAAGTACGTGGAGGAGCAGCTGGCGGCGCGGCTGGGCAAGACGGCGGAEST: gi|34988140|gb|CF562057.1|CF562057
genomic: TACGTGAAGGCCAAGAGCATTGCGGTGCAGATGGACGAGGATGCACACATgtgagtggtg ... ccgctcgcagGCAGAAGTACGTGGAGGAGCAGCTGGCGGCGCGGCTGGGCAAGACGGCGGA
EST: TACGTGAAGGCCAAGAGCATTGCGGTGCAGATGGACGAGGATGCACACAT GCAGAAGTACGTGGAGGAGCAGCTGGCGGCGCGGCTGGGCAAGACGGCGGA
genomic: TACGTGAAGGCCAAGAGCATTGCGGTGCAGATGGACGAGGATGCACACATgtgagtggtg ... ccgctcgcagGCAGAAGTACGTGGAGGAGCAGCTGGCGGCGCGGCTGGGCAAGACGGCGGA
agacgtcacgcactcatcaacacaccacacacgcacgcgcctgatccgctcgcagGCAGAAGTACGTGGAGGAGCAGCTGGCGGCGCGGCTGGGCAAGACGGCGGAGGCGGAGGCGGAGGAGAACGACCCCGAGGTCAAGCGGAGAAAG
gcctgat putative branch site (score: 4)
tccgctc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgtggcaggttcctgccatcttaaacctttatgggcaagctccaagacgtcacgcactcatcaacacaccacacacgcacgcgcctgatccgctcgcagGCAGAAGTACGTGGAGGAGCAGCTGGCGGCGCGGCTGGGCAAGACGGCGGAGGCGGAGGCGGAGGAGAACGACCCCGAGGTCAAGCGGAGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - cttaaac
- - - - - - - - - - - - - - tttatgg
- - - - - - - - - - - - - - - - - - - - - ccaagac
- - - - - - - - - - - - - - - - - - - - - - - - - -cacgcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acacacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acacacg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacgcgc