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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggctttttcgatttgacgatttcaataattaggtttatttatatgcttttgactaaagcagaagtctttaaatttctgcacagAATTATTTCTATGGAGTCACCAACGATCTCACTGTCTACACAAAAACCGTTAAGTTCAGTGATGTGCAAGTATATCGAATCGGTGATTTTAGAGTGAGTG

Basic information

species Arabidopsis thaliana
transcript AT5G39930.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116463908|gb|EG506500.1|EG506500
EST:     TCTCTAGGAGCTCTGACTCTCGCAAAACATTGAGGAACAGTAATATTCAG                         AATTATTTCTATGGAGTCACCAACGATCTCACTGTCTACACAAAAACCGTT
genomic: TCTCTAGGAGCTCTGACTTTCGCAAAACATTGAGGAACAGTAATATTCAGgtaggctttt ... ttctgcacagAATTATTTCTATGGAGTCACCAACGATCTCACTGTCTACACAAAAACCGTT
EST: gi|116463899|gb|EG506491.1|EG506491
EST:     TCTCTAGGAGCTCTGACTTTCGCAAAACATTGAGGAACAGTAATATTCAG                         AATTATTTCTATGGAGTCACCAACGATCTCACTGTCTACACAAAAACCGTT
genomic: TCTCTAGGAGCTCTGACTTTCGCAAAACATTGAGGAACAGTAATATTCAGgtaggctttt ... ttctgcacagAATTATTTCTATGGAGTCACCAACGATCTCACTGTCTACACAAAAACCGTT
EST: gi|116463918|gb|EG506510.1|EG506510
EST:     TCTCTAGGAGCTCTGACTTTCGCAAAACATTGAGGAACAGTAATATTCAG                         AATTATTTCTATGGAGTCACCAACGATCTCACTGTCTACACAAAAACCGTT
genomic: TCTCTAGGAGCTCTGACTTTCGCAAAACATTGAGGAACAGTAATATTCAGgtaggctttt ... ttctgcacagAATTATTTCTATGGAGTCACCAACGATCTCACTGTCTACACAAAAACCGTT
EST: gi|116463874|gb|EG506466.1|EG506466
EST:     TCTCTAGGAGCTCTGACTTTCGCAAAACATTGAGGAACAGTAATATTCAG                         AATTATTTCTATGGAGTCACCAACGATCTCACTGTCTACACAAAAACCGTT
genomic: TCTCTAGGAGCTCTGACTTTCGCAAAACATTGAGGAACAGTAATATTCAGgtaggctttt ... ttctgcacagAATTATTTCTATGGAGTCACCAACGATCTCACTGTCTACACAAAAACCGTT
EST: gi|116463877|gb|EG506469.1|EG506469
EST:     TCTCTAGGAGCTCTGACTTTCGCAAAACATTGAGGAACAGTAATATTCAG                         AATTATTTCTATGGAGTCACCAACGATCTCACTGTCTACACAAAAACCGTT
genomic: TCTCTAGGAGCTCTGACTTTCGCAAAACATTGAGGAACAGTAATATTCAGgtaggctttt ... ttctgcacagAATTATTTCTATGGAGTCACCAACGATCTCACTGTCTACACAAAAACCGTT
EST: gi|116463913|gb|EG506505.1|EG506505
EST:     TCTCTAGGAGCTCTGACTTTCGCAAAACATTGAGGAACAGTAATATTCAG                         AATTATTTCTATGGAGTCACCAACGATCTCACTGTCTACACAAAAACCGTT
genomic: TCTCTAGGAGCTCTGACTTTCGCAAAACATTGAGGAACAGTAATATTCAGgtaggctttt ... ttctgcacagAATTATTTCTATGGAGTCACCAACGATCTCACTGTCTACACAAAAACCGTT
EST: gi|116463891|gb|EG506483.1|EG506483
EST:     TCTCTAGGAGCTCTGACTTTCGCAAAACATTGAGGAACAGTAATATTCAG                         AATTATTTCTATGGAGTCACCAACGATCTCACTGTCTACACAAAAACCGTT
genomic: TCTCTAGGAGCTCTGACTTTCGCAAAACATTGAGGAACAGTAATATTCAGgtaggctttt ... ttctgcacagAATTATTTCTATGGAGTCACCAACGATCTCACTGTCTACACAAAAACCGTT
EST: gi|116463879|gb|EG506471.1|EG506471
EST:     TCTCTAGGAGCTCTGACTTTCGCAAAACATTGAGGAACAGTAATATTCAG                         AATTATTTCTATGGAGTCACCAACGATCTCACTGTCTACACAAAAACCGTT
genomic: TCTCTAGGAGCTCTGACTTTCGCAAAACATTGAGGAACAGTAATATTCAGgtaggctttt ... ttctgcacagAATTATTTCTATGGAGTCACCAACGATCTCACTGTCTACACAAAAACCGTT
EST: gi|116463884|gb|EG506476.1|EG506476
EST:     TCTCTAGGAGCTCTGACTTTCGCAAAACATTGAGGAACGGTAATATTCAG                         AATTATTTCTATGGAGTCACCAACGATCTCACTGTCTACACAAAAACCGTT
genomic: TCTCTAGGAGCTCTGACTTTCGCAAAACATTGAGGAACAGTAATATTCAGgtaggctttt ... ttctgcacagAATTATTTCTATGGAGTCACCAACGATCTCACTGTCTACACAAAAACCGTT
EST: gi|116463901|gb|EG506493.1|EG506493
EST:     TCTCTAGGAGCTCTGACTTTCGCAAAACATTGAGGAACAGTAATATTCAG                         AATTATTTCTATGGAGTCACCAACGATCTCACTGTCTACACAAAAACCGTT
genomic: TCTCTAGGAGCTCTGACTTTCGCAAAACATTGAGGAACAGTAATATTCAGgtaggctttt ... ttctgcacagAATTATTTCTATGGAGTCACCAACGATCTCACTGTCTACACAAAAACCGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaggtttatttatatgcttttgactaaagcagaagtctttaaatttctgcacagAATTATTTCTATGGAGTCACCAACGATCTCACTGTCTACACAAAAACCGTTAAGTTCAGTGATGTGCAAGTATATCGAATCGGTGATTTTAGAGTGAGTG
                      gactaaa  putative branch site (score: 2)
                                            tttctgc  putative PPT
     tttatttatatgcttt  TA-rich tract