1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaagaatactctattctccacgcaaaactgtaaccactagagatagttttcactctctttcctctcagATGCCGTGGATTCTTGAAGCTGAAGATTCAGGGTACATATGGGACTCCTGTTGCATTTGTTGATTTCCAG
species | Arabidopsis thaliana |
transcript | AT2G42240.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CCAAATTGCACGGAAGCTGAGCTAATTCAAGTTTTCTCGAG ATGCCGTGGATTCTTGAAGCTGAAGATTCAGGGTACATATGGGACTCCTGTEST: gi|116391480|gb|EG434072.1|EG434072
genomic: CCAAATTGCACCGAAGCTGAGCTAATTCAAGTTTTCTCGAGgtaagaatac ... ttcctctcagATGCCGTGGATTCTTGAAGCTGAAGATTCAGGGTACATATGGGACTCCTGT
EST: AATATGGGACCAAATTGCACCGAAGCTGAGCTAATTCAAGTTTTCTCGAG ATGCCGTGGATTCTTGAAGCTGAAGATTCAGGGTACATATGGGACTCCTGTEST: gi|116391488|gb|EG434080.1|EG434080
genomic: AATATGGGACCAAATTGCACCGAAGCTGAGCTAATTCAAGTTTTCTCGAGgtaagaatac ... ttcctctcagATGCCGTGGATTCTTGAAGCTGAAGATTCAGGGTACATATGGGACTCCTGT
EST: AATATGGGACCAAATTGCACCGAAGCTGAGCTAATTCAAGTTTTCTCGAG ATGCCGTGGATTCTTGAAGCTGAAGATTCAGGGTACATATGGGACTCCTGTEST: gi|116391485|gb|EG434077.1|EG434077
genomic: AATATGGGACCAAATTGCACCGAAGCTGAGCTAATTCAAGTTTTCTCGAGgtaagaatac ... ttcctctcagATGCCGTGGATTCTTGAAGCTGAAGATTCAGGGTACATATGGGACTCCTGT
EST: AATATGGGACCAAATTGCACCGAAGCTGAGCTAATTCAAGTTTTCTCGAG ATGCCGTGGATTCTTGAAGCTGAAGATTCAGGGTACATATGGGACTCCTGTEST: gi|116391481|gb|EG434073.1|EG434073
genomic: AATATGGGACCAAATTGCACCGAAGCTGAGCTAATTCAAGTTTTCTCGAGgtaagaatac ... ttcctctcagATGCCGTGGATTCTTGAAGCTGAAGATTCAGGGTACATATGGGACTCCTGT
EST: AATATGGGACCAAATTGCACCGAAGCTGAGCTAATTCAAGTTTTCTCGAG ATGCCGTGGATTCTTGAAGCTGAAGATTCAAGGTACATATGGGACTCCTGTEST: gi|116391487|gb|EG434079.1|EG434079
genomic: AATATGGGACCAAATTGCACCGAAGCTGAGCTAATTCAAGTTTTCTCGAGgtaagaatac ... ttcctctcagATGCCGTGGATTCTTGAAGCTGAAGATTCAGGGTACATATGGGACTCCTGT
EST: AATATGGGACCAAATTGCACCGAAGCTGAGCTAATTCAAGTTTTCTCGAG ATGCCGTGGATTCTTGAAGCTGAAGATTCAGGGTACATATGGGACTCCTGTEST: gi|86072037|gb|DR367794.1|DR367794
genomic: AATATGGGACCAAATTGCACCGAAGCTGAGCTAATTCAAGTTTTCTCGAGgtaagaatac ... ttcctctcagATGCCGTGGATTCTTGAAGCTGAAGATTCAGGGTACATATGGGACTCCTGT
EST: AATATGGGACCAAATTGCACCGAAGCTGAGCTAATTCAAGTTTTCTCGAG ATGCCGTGGATTCTTGAAGCTGAAGATTCAGGGTACATATGGGACTCCTGTEST: gi|164228686|gb|ES119679.1|ES119679
genomic: AATATGGGACCAAATTGCACCGAAGCTGAGCTAATTCAAGTTTTCTCGAGgtaagaatac ... ttcctctcagATGCCGTGGATTCTTGAAGCTGAAGATTCAGGGTACATATGGGACTCCTGT
EST: AATATGGGACCAAATTGCACCGAAGCTGAGCTAATTCAAGTTTTCTCGAG ATGCCGTGGATTCTTGAAGCTGAAGATTCAGGGTACATATGGGACTCCEST: gi|116391479|gb|EG434071.1|EG434071
genomic: AATATGGGACCAAATTGCACCGAAGCTGAGCTAATTCAAGTTTTCTCGAGgtaagaatac ... ttcctctcagATGCCGTGGATTCTTGAAGCTGAAGATTCAGGGTACATATGGGACTCC
EST: CCGAAGCTGAGCTAATTCAAGTTTTCTCGAG ATGCCGTGGATTCTTGAAGCTGAAGATTCAGGGTACATATGGGACTCCTGTEST: gi|116391483|gb|EG434075.1|EG434075
genomic: CCGAAGCTGAGCTAATTCAAGTTTTCTCGAGgtaagaatac ... ttcctctcagATGCCGTGGATTCTTGAAGCTGAAGATTCAGGGTACATATGGGACTCCTGT
EST: AATATGGGACCAAATTGCACCGAAGCTGAGCTAATTCAAGTTTTCTCGAG ATGCCGTGGATTCTTGAAGCTGAAGATTCAGGGTACATATGGGACTCCTGT
genomic: AATATGGGACCAAATTGCACCGAAGCTGAGCTAATTCAAGTTTTCTCGAGgtaagaatac ... ttcctctcagATGCCGTGGATTCTTGAAGCTGAAGATTCAGGGTACATATGGGACTCCTGT
ttctccacgcaaaactgtaaccactagagatagttttcactctctttcctctcagATGCCGTGGATTCTTGAAGCTGAAGATTCAGGGTACATATGGGACTCCTGTTGCATTTGTTGATTTCCAG
ctgtaac putative branch site (score: 3)
tagttttcactctctt putative PPT
atagtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaatactctattctccacgcaaaactgtaaccactagagatagttttcactctctttcctctcagATGCCGTGGATTCTTGAAGCTGAAGATTCAGGGTACATATGGGACTCCTGTTGCATTTGTTGATTTCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA