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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgttagaattagatcagttataaaagaaatccgtttcaaatagcttatccaacatattgacccatgtatgtctcctcagGACTAAGTGCTTATCTCACAACTCCACTGGATGTTGTAAAAACAAGACTGCAAGTGCAAGGATCAACGATCAA

Basic information

species Arabidopsis thaliana
transcript AT1G74240.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G74240.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA04G32470.1 (Glycine max), 3'ss of exon 7
gtacgttagaattagatcagttataaaagaaatccgtttcaa-atagcttatccaacatattgacccatgt--------atgtctcctcagGACTAAGTGCTTATCTCACAACTCCACTGGATGTTGTAAAAACAAGACTGCAAGTGCAAGGATCAACGATCAA
||| ||        | || |   |||| || |   | | ||   |   || ||   ||||     |  | |        ||   |   |||| || ||||| |||||||| |||||  |||||||||| ||||| |||||||||||||| || |||||  | | 
gtatgtccagt---gctctgccttaaatgataagtgctgcagtgttctttgtcttccataaaactcagtattgttcactataattgaacagGTCTCAGTGCATATCTCACCACTCCTTTGGATGTTGTTAAAACTAGACTGCAAGTGCAGGGTTCAACTTTGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agaaatccgtttcaaatagcttatccaacatattgacccatgtatgtctcctcagGACTAAGTGCTTATCTCACAACTCCACTGGATGTTGTAAAAACAAGACTGCAAGTGCAAGGATCAACGATCAA
                              tattgac  putative branch site (score: 2)
                                            tgtctcctc  putative PPT
         tttcaaata  TA-rich tract