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gtattagtttcatctcttgttctcgttcacggtgcttatatgtaaggtgaattcttatgaatgtttggtataatacagGTGAGAAAGCTGGAGTTCTTGATAGCGTTTCTTGTGTTCACAATTGCAATATGCTTCTTTGTTGAGCTTCATTACTCAAAGCCAGACCCAGGAGAAGTCC
species | Arabidopsis thaliana |
transcript | AT1G80830.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTCTGACAGGCTTAAGTACGCTGATTCTTCTCGCACTCCAAAAATACGGG GTGAGAAAGCTGGAGTTCTTGATAGCGTTTCTTGTGTTCACAATTGCAATAEST: gi|124964269|gb|EL038547.1|EL038547
genomic: TTCTGACAGGCTTAAGTACGCTGATTCTTCTCGCACTTCAAAAATACGGGgtattagttt ... tataatacagGTGAGAAAGCTGGAGTTCTTGATAGCGTTTCTTGTGTTCACAATTGCAATA
EST: TTCTGACAGGCTTAAGTACGCTGATTCTTCTCGCACTTCAAAAATACGGG GTGAGAAAGCTGGAGTTCEST: gi|124911821|gb|EH985901.1|EH985901
genomic: TTCTGACAGGCTTAAGTACGCTGATTCTTCTCGCACTTCAAAAATACGGGgtattagttt ... tataatacagGTGAGAAAGCTGGAGTTC
EST: ATTCTTCTCGCACTTCAAAAATACGGG GTGAGAAAGCTGGAGTTCTTGATAGCGTTTCTTGTGTTCACAATTGCAATAEST: gi|116476122|gb|EG518714.1|EG518714
genomic: ATTCTTCTCGCACTTCAAAAATACGGGgtattagttt ... tataatacagGTGAGAAAGCTGGAGTTCTTGATAGCGTTTCTTGTGTTCACAATTGCAATA
EST: TTCTGACAGGCTTAAGTACGCTGATTCTTCTCGCACTTCAAAAATACGGG GTGAGAAAGCTGGAGTTCTTGATAGCGTTTCTTGTGTTCACAATTGCAATAEST: gi|116476121|gb|EG518713.1|EG518713
genomic: TTCTGACAGGCTTAAGTACGCTGATTCTTCTCGCACTTCAAAAATACGGGgtattagttt ... tataatacagGTGAGAAAGCTGGAGTTCTTGATAGCGTTTCTTGTGTTCACAATTGCAATA
EST: TTCTGACAGGCTTAAGTACGCTGATTCTTCTCGCACTTCAAAAATACGGG GTGAGAAAGCTGGAGTTCTTGATAGCGTTTCTTGTGTTCACAATTGCAATAEST: gi|116476120|gb|EG518712.1|EG518712
genomic: TTCTGACAGGCTTAAGTACGCTGATTCTTCTCGCACTTCAAAAATACGGGgtattagttt ... tataatacagGTGAGAAAGCTGGAGTTCTTGATAGCGTTTCTTGTGTTCACAATTGCAATA
EST: TTCTGACAGGCTTAAGTACGCTGATTCTTCTCGCACTCCAAAAATACGGG GTGAGAAAGCTGGAGTTCTTGATAGCGTTTCTTGTGTTCACAATTGCAATA
genomic: TTCTGACAGGCTTAAGTACGCTGATTCTTCTCGCACTTCAAAAATACGGGgtattagttt ... tataatacagGTGAGAAAGCTGGAGTTCTTGATAGCGTTTCTTGTGTTCACAATTGCAATA
cgttcacggtgcttatatgtaaggtgaattcttatgaatgtttggtataatacagGTGAGAAAGCTGGAGTTCTTGATAGCGTTTCTTGTGTTCACAATTGCAATATGCTTCTTTGTTGAGCTTCATTACTCAAAGCCAGACCCAGGAGAAGTCC
ttatatgtaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattagtttcatctcttgttctcgttcacggtgcttatatgtaaggtgaattcttatgaatgtttggtataatacagGTGAGAAAGCTGGAGTTCTTGATAGCGTTTCTTGTGTTCACAATTGCAATATGCTTCTTTGTTGAGCTTCATTACTCAAAGCCAGACCCAGGAGAAGTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT