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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaccacaaaaatccactcttttcttttagttttatgatccaagtttactaaattccgctacagGAAAACATTTGGCTGAGCAATGTAGAGCCGAGTACTCCAAAGTTCCAAACTTTATGTTATGGGTCGTTGCTGAAATTGCAGTAGTTGCTTGTGACATACC

Basic information

species Arabidopsis thaliana
transcript AT1G80830.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125147599|gb|EL181732.1|EL181732
EST:     CTAATCTTGGTGTTGTTACAG                         GAAAACATTTGGCTGAGCAATGTAGAGCCGAGTACTCCAAAGTTCCAAACT
genomic: CTAATCTTGGTGTTGTCACAGgttaccacaa ... tccgctacagGAAAACATTTGGCTGAGCAATGTAGAGCCGAGTACTCCAAAGTTCCAAACT
EST: gi|116476119|gb|EG518711.1|EG518711
EST:     TGCGGCTTTGGTGATTCAATCTCTGGCTGCTAATCTTGGTGTTGTCACAG                         GAAAACATTTGGCTGAGCAATGTAGAGCCGAGTACTCCAAAGTTCCAAACT
genomic: TGCGGCTTTGGTGATTCAATCTCTGGCTGCTAATCTTGGTGTTGTCACAGgttaccacaa ... tccgctacagGAAAACATTTGGCTGAGCAATGTAGAGCCGAGTACTCCAAAGTTCCAAACT
EST: gi|116476121|gb|EG518713.1|EG518713
EST:     TGCGGCTTTGGTGATTCAATCTCTGGCTGCTAATCTTGGTGTTGTCACAG                         GAAAACATTTGGCTGAGCAATGTAGAGCCGAGTACTCCAAAGTTCCAAACT
genomic: TGCGGCTTTGGTGATTCAATCTCTGGCTGCTAATCTTGGTGTTGTCACAGgttaccacaa ... tccgctacagGAAAACATTTGGCTGAGCAATGTAGAGCCGAGTACTCCAAAGTTCCAAACT
EST: gi|124706877|gb|EH798279.1|EH798279
EST:     TGCGGCTTTGGTGATTCAATCTCTGGCTGCTAATCTTGGTGTTGTCACAG                         GAAAACATTTG
genomic: TGCGGCTTTGGTGATTCAATCTCTGGCTGCTAATCTTGGTGTTGTCACAGgttaccacaa ... tccgctacagGAAAACATTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatccactcttttcttttagttttatgatccaagtttactaaattccgctacagGAAAACATTTGGCTGAGCAATGTAGAGCCGAGTACTCCAAAGTTCCAAACTTTATGTTATGGGTCGTTGCTGAAATTGCAGTAGTTGCTTGTGACATACC
                                     tactaaa  putative branch site (score: 1)
                                            ttccgct  CT-rich tract
          ttttcttttagtttta  TA-rich tract